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  5. PTI_27G00310.1

PTI_27G00310.1


Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0000048 (OrthoFinder) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_27G00310.1
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Cre02.g079400 30785182 No description available 0.02 OrthoFinder
Cz06g28140.t1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Cz08g24230.t1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Cz10g03070.t1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Cz14g18060.t1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Sro1330_g263450.1 Contig4401.g33064 29 kDa ribonucleoprotein A, chloroplastic 0.03 OrthoFinder
Sro53_g031580.1 Contig1592.g14498 Cold-inducible RNA-binding protein 0.03 OrthoFinder
Sro979_g227190.1 Contig4114.g31401 29 kDa ribonucleoprotein 0.03 OrthoFinder
TP16G00570.1 No alias RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
XM_003062259.1 MicpuC2_42094, 42094 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01003429.1_cds_GFH27307.1_21784 HaLaN_25610, GFH27307 RRM domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000015.1_cds_PRW33883.1_2944 PRW33883 Serine arginine repetitive matrix 5-like isoform X2 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 157 225
No external refs found!