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  5. PTI_27G00180.1

PTI_27G00180.1


Description : AAA ATPase, AAA+ lid domain; MIT; ATPase, AAA-type, core; Vps4 oligomerisation, C-terminal [Interproscan].


Gene families : OG_01_0000074 (OrthoFinder) Phylogenetic Tree(s): OG0000074_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_27G00180.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001126.11 tig00001126_g7122.t1 Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1... 0.05 OrthoFinder
Cpa|evm.model.tig00021179.32 tig00021179_g19247.t1 Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre02.g079300 30786252, VPS4 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.06 OrthoFinder
Dusal.0273s00012.1 33201816 ATPase, AAA-type, core; Vps4 oligomerisation, C-terminal... 0.02 OrthoFinder
OT_10G00610.1 No alias MIT; ATPase, AAA-type, core; Vps4 oligomerisation,... 0.02 OrthoFinder
Sro1177_g249420.1 Contig1274.g11883 Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 0.03 OrthoFinder
Transcript_contig_54972 54972 MIT; ATPase, AAA-type, core; Vps4 oligomerisation,... 0.02 OrthoFinder
XM_002501909.1 MICPUN_97315, 97315 Microtubule-severing protein katanin 60kDa subunit (KAT1) 0.02 OrthoFinder
XM_002504323.1 MICPUN_113360, 113360 MIT; ATPase, AAA-type, core; Vps4 oligomerisation,... 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497879.1_6832 KAA8497879 Vacuolar protein sorting-associated protein 4 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
CC GO:0005795 Golgi stack IEP Enrichment
BP GO:0005996 monosaccharide metabolic process IEP Enrichment
BP GO:0006013 mannose metabolic process IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
BP GO:0007155 cell adhesion IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
MF GO:0008194 UDP-glycosyltransferase activity IEP Enrichment
MF GO:0008375 acetylglucosaminyltransferase activity IEP Enrichment
MF GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
BP GO:0019318 hexose metabolic process IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
BP GO:0022610 biological adhesion IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
CC GO:0031984 organelle subcompartment IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
CC GO:0098791 Golgi apparatus subcompartment IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 160 291
IPR015415 Vps4_C 392 443
IPR007330 MIT_dom 8 70
IPR041569 AAA_lid_3 316 349
No external refs found!