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  5. PTI_26G00860.1

PTI_26G00860.1


Description : Ribosomal protein L35A [Interproscan].


Gene families : OG_01_0003454 (OrthoFinder) Phylogenetic Tree(s): OG0003454_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_26G00860.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020723.23 tig00020723_g13442.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.33 OrthoFinder
Cre10.g459250 30790514, RPL35a Protein biosynthesis.cytosolic ribosome.large subunit... 0.35 OrthoFinder
Cz08g32140.t1 No alias Ribosomal protein L35A [Interproscan]. 0.24 OrthoFinder
Dusal.0293s00005.1 33190176 Ribosomal protein L35A [Interproscan]. 0.18 OrthoFinder
EOD28237 No alias Ribosomal protein L35A [Interproscan]. 0.23 OrthoFinder
EOD40099 No alias 60S ribosomal protein L35A [Ensembl]. 0.23 OrthoFinder
OT_08G03250.1 No alias Ribosomal protein L35A [Interproscan]. 0.17 OrthoFinder
Sro60_g034780.1 Contig797.g8955 60S ribosomal protein L35a 0.5 OrthoFinder
SymbC1.scaffold1015.3 1015.3 Ribosomal protein L35A [Interproscan]. 0.04 OrthoFinder
TP10G03680.1 No alias Ribosomal protein L35A [Interproscan]. 0.29 OrthoFinder
Vocar.0020s0177.1 32886748 Ribosomal protein L35A [Interproscan]. 0.18 OrthoFinder
XM_002508291.1 MICPUN_108826, 108826 Ribosomal protein L35A [Interproscan]. 0.35 OrthoFinder
XM_003058988.1 MicpuC2_58446, 58446 Ribosomal protein L35A [Interproscan]. 0.14 OrthoFinder
lcl|LHPG02000006.1_cds_PRW57926.1_8416 PRW57926 60S ribosomal L35a-3 0.2 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495080.1_3610 KAA8495080 60S ribosomal protein L35a 0.29 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
InterPro domains Description Start Stop
IPR001780 Ribosomal_L35A 90 180
No external refs found!