PTI_26G00140.1


Description : TraB family [Interproscan].


Gene families : OG_01_0000457 (OrthoFinder) Phylogenetic Tree(s): OG0000457_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_26G00140.1
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold3087.2 3087.2 TraB family [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Enrichment
BP GO:0000723 telomere maintenance IEP Enrichment
CC GO:0000808 origin recognition complex IEP Enrichment
MF GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007062 sister chromatid cohesion IEP Enrichment
BP GO:0007064 mitotic sister chromatid cohesion IEP Enrichment
BP GO:0007155 cell adhesion IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0019239 deaminase activity IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0022610 biological adhesion IEP Enrichment
BP GO:0030099 myeloid cell differentiation IEP Enrichment
BP GO:0030154 cell differentiation IEP Enrichment
BP GO:0030218 erythrocyte differentiation IEP Enrichment
CC GO:0031390 Ctf18 RFC-like complex IEP Enrichment
BP GO:0032200 telomere organization IEP Enrichment
BP "width=device-width"> <a href="/go/view/15763" data-toggle="tooltip" data-placement="top" title=""A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition." [GOC:isa_complete]">GO:0032502</a></td> <td class="col-xs-6">developmental process</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Enrichment</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/16164" data-toggle="tooltip" data-placement="top" title=""The controlled release of a substance by a cell." [GOC:mah]">GO:0032940</a></td> <td class="col-xs-6">secretion by cell</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Enrichment</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/21312" data-toggle="tooltip" data-placement="top" title=""The covalent attachment of a glycosyl residue to one or more monomeric units in a polypeptide, polynucleotide, polysaccharide, or other biological macromolecule." [GOC:jl]">GO:0043413</a></td> <td class="col-xs-6">macromolecule glycosylation</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Enrichment</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/24341" data-toggle="tooltip" data-placement="top" title=""The controlled release of a substance by a cell or a tissue." [GOC:ai]">GO:0046903</a></td> <td class="col-xs-6">secretion</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Enrichment</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/26170" data-toggle="tooltip" data-placement="top" title=""A biological process whose specific outcome is the progression of a cell over time from an initial condition to a later condition." [GOC:isa_complete]">GO:0048869</a></td> <td class="col-xs-6">cellular developmental process</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Enrichment</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/27462" data-toggle="tooltip" data-placement="top" title=""A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. This term covers covalent modifications at the molecular level as well as spatial relationships among the major components of a chromosome." [GOC:ai, GOC:dph, GOC:jl, GOC:mah]">GO:0051276</a></td> <td class="col-xs-6">chromosome organization</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Enrichment</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/29276" data-toggle="tooltip" data-placement="top" title=""A homeostatic process involved in the maintenance of an internal steady state within a defined anatomical structure of an organism, including control of cellular proliferation and death and control of metabolic function. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome." [GOC:dph]">GO:0060249</a></td> <td class="col-xs-6">anatomical structure homeostasis</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Enrichment</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/31578" data-toggle="tooltip" data-placement="top" title=""Interacting selectively and non-covalently with the oxidized form, NAD, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions." [GOC:mah]">GO:0070403</a></td> <td class="col-xs-6">NAD+ binding</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Enrichment</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/38893" data-toggle="tooltip" data-placement="top" title=""The directed movement of some substance from a cell, into the extracellular region. This may occur via transport across the plasma membrane or via exocytosis." [GOC:pg]">GO:0140352</a></td> <td class="col-xs-6">export from cell</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Enrichment</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/42179" data-toggle="tooltip" data-placement="top" title=""A process that is part of the mitotic cell cycle." [GO_REF:0000060, GOC:mtg_cell_cycle, GOC:TermGenie]">GO:1903047</a></td> <td class="col-xs-6">mitotic cell cycle process</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Enrichment</td> </tr> </tbody> </table> </div> </div> <div class="tab-pane fade" id="tab3default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="interpro_table"> <thead> <tr> <th class="col-xs-3" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/interpro_domain" data-target="#helpModal">InterPro domains</abbr></th> <th class="col-xs-5" data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Start</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Stop</th> </tr> </thead> <tbody> <tr> <td class="col-xs-3"><a href="/interpro/view/2323">IPR002816</a></td> <td class="col-xs-5">TraB/PrgY/GumN_fam</td> <td class="col-xs-2">143</td> <td class="col-xs-2">398</td> </tr> </tbody> </table> </div> </div> </div> </div> </div> <div class="row"> <div class="col-lg-12 col-md-12 col-sm-12"> <div class="panel panel-default"> <div class="panel-heading" id="links">External Links</div> <div class="table-responsive"> <table class="table table-striped table-separated"> <tbody> <tr> <td><em>No external refs found!</em></td> </td> </tr> </tbody> </table> </div> </div> </div> </div> <div class="modal" id="profileModal" tabindex="-1" role="dialog" aria-labelledby="profileModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> </div> </div> </div> <footer class="footer" id="footer"> <div class="container"> <div class="row"> <div class="col-xs-2"><strong class="text-muted"><a href="/features" class="text-muted">protists.guru</a></strong></div> <div class="col-xs-2"><a href="/about" class="text-muted">About</a></div> <div class="col-xs-2"><a href="/contact" class="text-muted">Contact</a></div> <div class="col-xs-2"><a href="/disclaimer" class="text-muted">Disclaimer</a></div> <div class="col-xs-2"><a href="/privacy" class="text-muted">Privacy policy</a></div> </div> </div> </footer> <div class="modal" id="helpModal" tabindex="-1" role="dialog" aria-labelledby="helpModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> <div class="modal" id="loaderModal" tabindex="-1" role="dialog" aria-labelledby="loaderModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> <div class="modal-body"> <div id="leafy_loader"></div> <p class="text-center text-muted" id="leafy_loader_text">Loading ... please wait ... </p> <p class="text-center" id="leafy_loader_close_btn" style="display:none"><button type="button" class="btn btn-primary" data-dismiss="modal" style>Close</button></p> </div> </div> </div> </div> <script src="/static/js/jquery.min.js"></script> <script src="/static/js/bootstrap.min.js"></script> <script src="/static/js/stupidtable.min.js"></script> <script src="/static/js/TweenMax.min.js"></script> <script src="/static/js/jquery.qtip.min.js"></script> <script src="/static/js/planet_loader.js"></script> <script> function init_qtip() { $('.qtip_tooltip').each(function() { $(this).qtip({ content: { text: function(event, api) { $.ajax({ url: api.elements.target.attr('qtip_href') }) .then(function(content) { // Set the tooltip content upon successful retrieval api.set('content.text', content); 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