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  5. PTI_25G00250.1

PTI_25G00250.1


Description : Ribosomal protein S21e [Interproscan].


Gene families : OG_01_0003705 (OrthoFinder) Phylogenetic Tree(s): OG0003705_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_25G00250.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020780.14 tig00020780_g13766.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder
Cre03.g203450 30787782, RPS21 Protein biosynthesis.cytosolic ribosome.small subunit... 0.4 OrthoFinder
Dusal.0001s00040.1 33198798 Ribosomal protein S21e [Interproscan]. 0.29 OrthoFinder
EOD12033 No alias Ribosomal protein S21e [Interproscan]. 0.12 OrthoFinder
OT_16G01860.1 No alias Ribosomal protein S21e [Interproscan]. 0.24 OrthoFinder
Sro6_g004850.1 Contig175.g1990 40S ribosomal protein S21 0.53 OrthoFinder
SymbC1.scaffold2995.5 2995.5 Ribosomal protein S21e [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold4516.5 4516.5 Ribosomal protein S21e [Interproscan]. 0.03 OrthoFinder
TP04G05880.1 No alias Ribosomal protein S21e [Interproscan]. 0.32 OrthoFinder
Vocar.0011s0134.1 32895267 Ribosomal protein S21e [Interproscan]. 0.09 OrthoFinder
XM_002506478.1 MICPUN_109558, 109558 Ribosomal protein S21e [Interproscan]. 0.31 OrthoFinder
XM_003063433.1 MicpuC2_45937, 45937 Ribosomal protein S21e [Interproscan]. 0.17 OrthoFinder
lcl|BLLF01004584.1_cds_GFH29895.1_24372 HaLaN_28641, GFH29895 40S ribosomal protein S21 0.03 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60607.1_4698 PRW60607 40S ribosomal S21-2 0.24 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498324.1_7277 KAA8498324 40S ribosomal protein S21 0.27 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004512 inositol-3-phosphate synthase activity IEP Enrichment
BP GO:0006020 inositol metabolic process IEP Enrichment
BP GO:0006021 inositol biosynthetic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
BP GO:0046173 polyol biosynthetic process IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001931 Ribosomal_S21e 1 77
No external refs found!