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  5. PTI_22G02200.1

PTI_22G02200.1


Description : RmlD-like substrate binding domain [Interproscan].


Gene families : OG_01_0004887 (OrthoFinder) Phylogenetic Tree(s): OG0004887_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_22G02200.1
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020553.161 tig00020553_g10653.t1 Carbohydrate metabolism.nucleotide sugar... 0.01 OrthoFinder
TP05G06000.1 No alias RmlD-like substrate binding domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
InterPro domains Description Start Stop
IPR029903 RmlD-like-bd 10 183
No external refs found!