1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_22G02070.1

PTI_22G02070.1


Description : Zinc finger, RING-type [Interproscan].


Gene families : OG_01_0000005 (OrthoFinder) Phylogenetic Tree(s): OG0000005_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_22G02070.1
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cz06g23110.t1 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
Cz07g13230.t1 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
OT_17G00530.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
Sro239_g096030.1 Contig3063.g24399 Protein ligase RNF181 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497115.1_844 KAA8497115 E3 ubiquitin-protein ligase RNF38 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495830.1_1828 KAA8495830 Putative E3 ubiquitin-protein ligase RHC1A 0.02 OrthoFinder
lcl|VRMN01000016.1_cds_KAA8491049.1_9806 KAA8491049 E3 ubiquitin-protein ligase 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP Enrichment
MF GO:0005384 manganese ion transmembrane transporter activity IEP Enrichment
BP GO:0006873 cellular ion homeostasis IEP Enrichment
BP GO:0006875 cellular metal ion homeostasis IEP Enrichment
BP GO:0008202 steroid metabolic process IEP Enrichment
MF GO:0009916 alternative oxidase activity IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Enrichment
BP GO:0016125 sterol metabolic process IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Enrichment
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Enrichment
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Enrichment
MF GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds IEP Enrichment
MF GO:0018580 nitronate monooxygenase activity IEP Enrichment
BP GO:0030003 cellular cation homeostasis IEP Enrichment
BP GO:0030026 cellular manganese ion homeostasis IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0046916 cellular transition metal ion homeostasis IEP Enrichment
MF GO:0047750 cholestenol delta-isomerase activity IEP Enrichment
BP GO:0048878 chemical homeostasis IEP Enrichment
BP GO:0050801 ion homeostasis IEP Enrichment
BP GO:0055065 metal ion homeostasis IEP Enrichment
BP GO:0055071 manganese ion homeostasis IEP Enrichment
BP GO:0055076 transition metal ion homeostasis IEP Enrichment
BP GO:0055080 cation homeostasis IEP Enrichment
BP GO:0055082 cellular chemical homeostasis IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0098771 inorganic ion homeostasis IEP Enrichment
InterPro domains Description Start Stop
IPR001841 Znf_RING 309 351
No external refs found!