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  5. PTI_22G00530.1

PTI_22G00530.1


Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0000905 (OrthoFinder) Phylogenetic Tree(s): OG0000905_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_22G00530.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000441.24 tig00021127_g18715.t1 Nucleolin 1 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder
Cre06.g275100 30778429 RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.1 OrthoFinder
Cre10.g466450 30789814 No description available 0.15 OrthoFinder
Cz01g09300.t1 No alias RNA recognition motif domain [Interproscan]. 0.14 OrthoFinder
Cz08g29220.t1 No alias RNA recognition motif domain [Interproscan]. 0.08 OrthoFinder
Dusal.0054s00014.1 33201653 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Dusal.0556s00003.1 33195343 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
EOD18277 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
EOD39665 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
OT_04G04950.1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
OT_05G05100.1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Sro402_g135470.1 Contig305.g4008 Stimulation factor subunit 2 tau variant 0.06 OrthoFinder
Sro656_g182510.1 Contig256.g3162 Splicing factor 3B subunit 4 0.08 OrthoFinder
Transcript_contig_57231 57231 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
Vocar.0002s0408.1 32891271 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
XM_002505110.1 MICPUN_102989, 102989 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
XM_003060411.1 MicpuC2_60299, 60299 RNA recognition motif domain [Interproscan]. 0.06 OrthoFinder
lcl|BLLF01003640.1_cds_GFH27838.1_22315 HaLaN_26222, GFH27838 Hypothetical protein 0.06 OrthoFinder
lcl|BLLF01004145.1_cds_GFH29022.1_23499 HaLaN_27610, GFH29022 RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59230.1_7321 PRW59230 Nucleolin 1-like isoform X2 0.03 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58178.1_8002 PRW58178 RNA-binding domain-containing 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003883 CTP synthase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Enrichment
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006576 cellular biogenic amine metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0009308 amine metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0031418 L-ascorbic acid binding IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044106 cellular amine metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 143 210
IPR000504 RRM_dom 255 325
No external refs found!