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  5. PTI_21G02720.1

PTI_21G02720.1


Description : Ribosomal protein L19/L19e; Chlorophyll A-B binding protein [Interproscan].


Gene families : OG_01_0002658 (OrthoFinder) Phylogenetic Tree(s): OG0002658_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_21G02720.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021181.1 tig00021181_g19305.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.29 OrthoFinder
Cre02.g075700 30785746, RPL19 Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder
Cz11g15180.t1 No alias Ribosomal protein L19/L19e [Interproscan]. 0.18 OrthoFinder
Dusal.0530s00005.1 33203474 Ribosomal protein L19/L19e [Interproscan]. 0.18 OrthoFinder
EOD07611 No alias Ribosomal protein L19/L19e [Interproscan]. 0.02 OrthoFinder
OT_02G02430.1 No alias Ribosomal protein L19/L19e [Interproscan]. 0.29 OrthoFinder
Sro734_g194640.1 Contig3769.g28942 60S ribosomal protein L19 0.55 OrthoFinder
SymbC1.scaffold3953.6 3953.6 Ribosomal protein L19/L19e [Interproscan]. 0.02 OrthoFinder
TP02G08540.1 No alias Ribosomal protein L19/L19e [Interproscan]. 0.16 OrthoFinder
Transcript_contig_90584 90584 Ribosomal protein L19/L19e [Interproscan]. 0.06 OrthoFinder
Vocar.0001s1683.1 32884888 Ribosomal protein L19/L19e [Interproscan]. 0.1 OrthoFinder
XM_002507605.1 MICPUN_112659, 112659 60S ribosomal protein L19 (RPL19) 0.37 OrthoFinder
XM_003055988.1 MicpuC2_49436, 49436 60S ribosomal protein L19 protein (RPL19) 0.06 OrthoFinder
lcl|BLLF01001946.1_cds_GFH21993.1_16470 HaLaN_19390, GFH21993 Ribosomal protein L19/L19e [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32846.1_3749 PRW32846 60S ribosomal L19-2 isoform A 0.24 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32847.1_3748 PRW32847 60S ribosomal L19-2 isoform B 0.05 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8490961.1_6164 KAA8490961 60S ribosomal protein L19-2 0.22 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004107 chorismate synthase activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006448 regulation of translational elongation IEP Enrichment
BP GO:0006449 regulation of translational termination IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0010628 positive regulation of gene expression IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045727 positive regulation of translation IEP Enrichment
BP GO:0045901 positive regulation of translational elongation IEP Enrichment
BP GO:0045905 positive regulation of translational termination IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051130 positive regulation of cellular component organization IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051247 positive regulation of protein metabolic process IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000196 Ribosomal_L19/L19e 10 151
IPR022796 Chloroa_b-bind 381 557
No external refs found!