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  5. PTI_21G02060.1

PTI_21G02060.1


Description : Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; CobW/HypB/UreG, nucleotide-binding domain [Interproscan].


Gene families : OG_01_0000111 (OrthoFinder) Phylogenetic Tree(s): OG0000111_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_21G02060.1
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
EOD09808 No alias CobW/HypB/UreG, nucleotide-binding domain; Cobalamin... 0.02 OrthoFinder
EOD30904 No alias CobW/HypB/UreG, nucleotide-binding domain; Cobalamin... 0.03 OrthoFinder
EOD39070 No alias CobW/HypB/UreG, nucleotide-binding domain [Interproscan]. 0.02 OrthoFinder
EOD39254 No alias CobW/HypB/UreG, nucleotide-binding domain; Cobalamin... 0.02 OrthoFinder
Transcript_contig_90264 90264 CobW/HypB/UreG, nucleotide-binding domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59349.1_7459 PRW59349 Cobalamin biosynthesis 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58648.1_7996 PRW58648 Cobalamin biosynthesis 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004618 phosphoglycerate kinase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
CC GO:0005787 signal peptidase complex IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006465 signal peptide processing IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
CC GO:0008537 proteasome activator complex IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR003495 CobW/HypB/UreG_dom 10 169
IPR011629 Cbl_biosynth_CobW-like_C 213 309
No external refs found!