1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_21G01720.1

PTI_21G01720.1


Description : Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan].


Gene families : OG_01_0001820 (OrthoFinder) Phylogenetic Tree(s): OG0001820_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_21G01720.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000128.22 tig00000128_g7223.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.31 OrthoFinder
Cre12.g529651 30793228 Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 OrthoFinder
Cz05g29300.t1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.13 OrthoFinder
Dusal.0017s00003.1 33200507 Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.08 OrthoFinder
EOD11441 No alias Hypothetical protein [Ensembl]. 0.04 OrthoFinder
EOD15552 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.12 OrthoFinder
EOD40179 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.02 OrthoFinder
OT_06G04270.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.3 OrthoFinder
Sro1315_g262090.1 Contig2837.g22773 60S ribosomal protein L7a 0.49 OrthoFinder
SymbC1.scaffold14594.1 14594.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.02 OrthoFinder
TP18G02460.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.25 OrthoFinder
Transcript_contig_80123 80123 Hypothetical protein 0.02 OrthoFinder
Vocar.0037s0084.1 32897494 Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.05 OrthoFinder
XM_002499781.1 MICPUN_107645, 107645 Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.27 OrthoFinder
XM_003062040.1 MicpuC2_51525, 51525 Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.15 OrthoFinder
lcl|BLLF01001934.1_cds_GFH21935.1_16412 HaLaN_19324, GFH21935 Ribosomal_L7Ae domain-containing protein 0.05 OrthoFinder
lcl|BLLF01002751.1_cds_GFH25208.1_19685 HaLaN_23136, GFH25208 Ribosomal_L7Ae domain-containing protein 0.03 OrthoFinder
lcl|LHPG02000025.1_cds_PRW20203.1_5633 PRW20203 60S ribosomal L7a 0.25 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497910.1_6863 KAA8497910 60S ribosomal protein L7a-2 0.24 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004814 arginine-tRNA ligase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005347 ATP transmembrane transporter activity IEP Enrichment
MF GO:0005471 ATP:ADP antiporter activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006420 arginyl-tRNA aminoacylation IEP Enrichment
BP GO:0006448 regulation of translational elongation IEP Enrichment
BP GO:0006449 regulation of translational termination IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006862 nucleotide transport IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0010628 positive regulation of gene expression IEP Enrichment
MF GO:0015217 ADP transmembrane transporter activity IEP Enrichment
MF GO:0015301 anion:anion antiporter activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045727 positive regulation of translation IEP Enrichment
BP GO:0045901 positive regulation of translational elongation IEP Enrichment
BP GO:0045905 positive regulation of translational termination IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0051130 positive regulation of cellular component organization IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051247 positive regulation of protein metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140323 solute:anion antiporter activity IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 119 203
No external refs found!