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  5. PTI_21G01710.1

PTI_21G01710.1


Description : Ribosomal protein S4/S9, N-terminal; RNA-binding S4 domain [Interproscan].


Gene families : OG_01_0002993 (OrthoFinder) Phylogenetic Tree(s): OG0002993_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_21G01710.1

Target Alias Description ECC score Gene Family Method Actions
OT_14G00670.1 No alias RNA-binding S4 domain; Ribosomal protein S4/S9,... 0.01 OrthoFinder
TP07G06000.1 No alias Ribosomal protein S4/S9, N-terminal; RNA-binding S4... 0.03 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32864.1_3649 PRW32864 U3 small nucleolar ribonucleo IMP3 0.01 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495454.1_1452 KAA8495454 U3 small nucleolar ribonucleoprotein IMP3 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003852 2-isopropylmalate synthase activity IEP Enrichment
MF GO:0005506 iron ion binding IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006551 leucine metabolic process IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
BP GO:0009098 leucine biosynthetic process IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Enrichment
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0031418 L-ascorbic acid binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001912 Ribosomal_S4/S9_N 4 62
IPR002942 S4_RNA-bd 107 152
No external refs found!