Description : Ribosomal protein L13e [Interproscan].
Gene families : OG_01_0002835 (OrthoFinder) Phylogenetic Tree(s): OG0002835_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: PTI_20G02450.1 | |
Cluster | HCCA: Cluster_4 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00020629.36 | tig00020629_g12358.t1 | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.4 | OrthoFinder | |
Cre14.g630100 | 30776357, RPL13 | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.1 | OrthoFinder | |
Cz15g22130.t1 | No alias | Ribosomal protein L13e; Tetratricopeptide repeat [Interproscan]. | 0.33 | OrthoFinder | |
Dusal.0041s00032.1 | 33194551 | Ribosomal protein L13e [Interproscan]. | 0.17 | OrthoFinder | |
EOD29349 | No alias | 60S ribosomal protein L13 [Ensembl]. | 0.19 | OrthoFinder | |
OT_05G05020.1 | No alias | Ribosomal protein L13e [Interproscan]. | 0.28 | OrthoFinder | |
Sro307_g113390.1 | Contig2839.g22809 | 60S ribosomal protein L13-1 | 0.6 | OrthoFinder | |
SymbC1.scaffold5728.4 | 5728.4 | Ribosomal protein L13e [Interproscan]. | 0.08 | OrthoFinder | |
TP04G08470.1 | No alias | Ribosomal protein L13e [Interproscan]. | 0.42 | OrthoFinder | |
Vocar.0006s0140.1 | 32894315 | Ribosomal protein L13e [Interproscan]. | 0.07 | OrthoFinder | |
XM_002502479.1 | MICPUN_90780, 90780 | Ribosomal protein L13e [Interproscan]. | 0.33 | OrthoFinder | |
XM_003056868.1 | MicpuC2_62462, 62462 | Ribosomal protein L13e [Interproscan]. | 0.1 | OrthoFinder | |
lcl|BLLF01001412.1_cds_GFH19137.1_13614 | HaLaN_16038, GFH19137 | 60S ribosomal protein L13 | 0.13 | OrthoFinder | |
lcl|BLLF01008736.1_cds_GFH33502.1_27979 | HaLaN_32883, GFH33502 | 60S ribosomal protein L13 | 0.05 | OrthoFinder | |
lcl|LHPG02000001.1_cds_PRW61522.1_672 | PRW61522 | 60S ribosomal L13-2 | 0.1 | OrthoFinder | |
lcl|VRMN01000011.1_cds_KAA8491921.1_4929 | KAA8491921 | 60S ribosomal protein L13-1 | 0.24 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
CC | GO:0005840 | ribosome | IEA | Interproscan |
BP | GO:0006412 | translation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEP | Enrichment |
MF | GO:0003924 | GTPase activity | IEP | Enrichment |
MF | GO:0004455 | ketol-acid reductoisomerase activity | IEP | Enrichment |
BP | GO:0006801 | superoxide metabolic process | IEP | Enrichment |
MF | GO:0008097 | 5S rRNA binding | IEP | Enrichment |
BP | GO:0009081 | branched-chain amino acid metabolic process | IEP | Enrichment |
BP | GO:0009082 | branched-chain amino acid biosynthetic process | IEP | Enrichment |
CC | GO:0015934 | large ribosomal subunit | IEP | Enrichment |
BP | GO:0016053 | organic acid biosynthetic process | IEP | Enrichment |
MF | GO:0019843 | rRNA binding | IEP | Enrichment |
CC | GO:0044391 | ribosomal subunit | IEP | Enrichment |
BP | GO:0072593 | reactive oxygen species metabolic process | IEP | Enrichment |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001380 | Ribosomal_L13e | 8 | 177 |
No external refs found! |