1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_20G02150.1

PTI_20G02150.1


Description : Ancestral coatomer element 1, Sec16/Sec31; WW domain [Interproscan].


Gene families : OG_01_0004756 (OrthoFinder) Phylogenetic Tree(s): OG0004756_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_20G02150.1
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
Cz11g21220.t1 No alias Ancestral coatomer element 1, Sec16/Sec31; Sec16,... 0.02 OrthoFinder
Sro498_g154930.1 Contig3753.g28747 Transport protein SEC16B 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001202 WW_dom 328 356
IPR001202 WW_dom 250 280
IPR001202 WW_dom 740 770
IPR001202 WW_dom 889 919
IPR001202 WW_dom 1000 1028
IPR001202 WW_dom 811 841
IPR001202 WW_dom 387 417
IPR001202 WW_dom 1772 1802
IPR001202 WW_dom 626 656
IPR001202 WW_dom 1624 1654
IPR001202 WW_dom 503 533
IPR001202 WW_dom 1066 1096
IPR024298 ACE1_Sec16_Sec31 1254 1480
No external refs found!