1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_20G02050.1

PTI_20G02050.1


Description : Ribosomal protein L22e [Interproscan].


Gene families : OG_01_0002253 (OrthoFinder) Phylogenetic Tree(s): OG0002253_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_20G02050.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001206.7 tig00001206_g7490.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.27 OrthoFinder
Cre07.g357850 30774301, RPL22 Protein biosynthesis.cytosolic ribosome.large subunit... 0.43 OrthoFinder
Cz08g30250.t1 No alias Ribosomal protein L22e [Interproscan]. 0.29 OrthoFinder
Dusal.0067s00003.1 33194677 Ribosomal protein L22e [Interproscan]. 0.39 OrthoFinder
EOD18860 No alias Ribosomal protein L22e [Interproscan]. 0.11 OrthoFinder
OT_12G02920.1 No alias Ribosomal protein L22e [Interproscan]. 0.3 OrthoFinder
Sro89_g046870.1 Contig3846.g29608 60S ribosomal protein L22 0.47 OrthoFinder
SymbC1.scaffold1954.5 1954.5 Ribosomal protein L22e [Interproscan]. 0.01 OrthoFinder
TP06G02320.1 No alias Ribosomal protein L22e [Interproscan]. 0.34 OrthoFinder
Transcript_contig_80087 80087 Ribosomal protein L22e [Interproscan]. 0.06 OrthoFinder
Vocar.0051s0045.1 32886996 Ribosomal protein L22e [Interproscan]. 0.22 OrthoFinder
XM_002499837.1 MICPUN_90144, 90144 Ribosomal protein L22e [Interproscan]. 0.31 OrthoFinder
XM_003055223.1 MicpuC2_31192, 31192 Ribosomal protein L22e [Interproscan]. 0.19 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39267.1_2590 PRW39267 60S ribosomal L22-2 0.25 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499191.1_8144 KAA8499191 60S ribosomal protein L22 0.21 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006448 regulation of translational elongation IEP Enrichment
BP GO:0006449 regulation of translational termination IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0010628 positive regulation of gene expression IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045727 positive regulation of translation IEP Enrichment
BP GO:0045901 positive regulation of translational elongation IEP Enrichment
BP GO:0045905 positive regulation of translational termination IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0051130 positive regulation of cellular component organization IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051247 positive regulation of protein metabolic process IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR002671 Ribosomal_L22e 7 115
No external refs found!