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  5. PTI_20G01000.1

PTI_20G01000.1


Description : RIO2 kinase winged helix domain, N-terminal; RIO1 family [Interproscan].


Gene families : OG_01_0003309 (OrthoFinder) Phylogenetic Tree(s): OG0003309_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_20G01000.1
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021357.28 tig00021357_g20757.t1 Protein modification.phosphorylation.atypical kinase... 0.02 OrthoFinder
Cre03.g159900 30787817 Protein modification.phosphorylation.atypical kinase... 0.03 OrthoFinder
OT_06G01600.1 No alias RIO2 kinase winged helix domain, N-terminal; RIO1 family... 0.02 OrthoFinder
Sro586_g171140.1 Contig1474.g13501 Protein kinase RIO2 0.06 OrthoFinder
XM_002500830.1 MICPUN_79518, 79518 RIO1 family; RIO2 kinase winged helix domain, N-terminal... 0.02 OrthoFinder
lcl|LHPG02000022.1_cds_PRW20749.1_5300 PRW20749 Serine threonine-kinase rio2 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004674 protein serine/threonine kinase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006468 protein phosphorylation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Enrichment
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030686 90S preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0031418 L-ascorbic acid binding IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR015285 RIO2_wHTH_N 8 91
No external refs found!