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  5. PTI_20G00430.1

PTI_20G00430.1


Description : ABC transporter-like; ABC-transporter extension domain [Interproscan].


Gene families : OG_01_0000132 (OrthoFinder) Phylogenetic Tree(s): OG0000132_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_20G00430.1
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
Cre01.g034950 30788752 ABC transporter F family member 4 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz03g13130.t1 No alias ABC-transporter extension domain; ABC transporter-like... 0.02 OrthoFinder
Sro1254_g256400.1 Contig4319.g32589 Probable ATP-binding cassette sub-family F member 3 homolog 0.02 OrthoFinder
XM_002500097.1 MICPUN_55988, 55988 Non-transporter ABC protein 0.02 OrthoFinder
XM_003060298.1 MicpuC2_60050, 60050 ABC transporter 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0004484 mRNA guanylyltransferase activity IEP Enrichment
MF GO:0004651 polynucleotide 5'-phosphatase activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006370 7-methylguanosine mRNA capping IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
MF GO:0008192 RNA guanylyltransferase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009452 7-methylguanosine RNA capping IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016791 phosphatase activity IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
BP GO:0036260 RNA capping IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
MF GO:0070568 guanylyltransferase activity IEP Enrichment
MF GO:0098518 polynucleotide phosphatase activity IEP Enrichment
InterPro domains Description Start Stop
IPR032781 ABC_tran_Xtn 591 653
IPR003439 ABC_transporter-like_ATP-bd 390 552
IPR003439 ABC_transporter-like_ATP-bd 721 851
No external refs found!