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  5. PTI_19G01960.1

PTI_19G01960.1


Description : S1 domain [Interproscan].


Gene families : OG_01_0001807 (OrthoFinder) Phylogenetic Tree(s): OG0001807_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_19G01960.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000605.10 tig00000605_g2475.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder
Cpa|evm.model.tig00000605.11 tig00000605_g2478.t1 rRNA biogenesis protein RRP5 OS=Arabidopsis thaliana 0.06 OrthoFinder
Cre10.g428750 30790321 Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 OrthoFinder
Cz01g27020.t1 No alias S1 domain; Suppressor of forked [Interproscan]. 0.18 OrthoFinder
EOD17851 No alias Suppressor of forked [Interproscan]. 0.09 OrthoFinder
OT_10G00010.1 No alias S1 domain; Suppressor of forked [Interproscan]. 0.03 OrthoFinder
Sro264_g102530.1 Contig921.g9679 Protein RRP5 0.19 OrthoFinder
TP17G00890.1 No alias Suppressor of forked [Interproscan]. 0.06 OrthoFinder
Transcript_contig_69303 69303 Hypothetical protein 0.04 OrthoFinder
Transcript_contig_78480 78480 S1 domain [Interproscan]. 0.07 OrthoFinder
Vocar.0005s0239.1 32883847 S1 domain; Suppressor of forked [Interproscan]. 0.07 OrthoFinder
XM_002504294.1 MICPUN_107434, 107434 Hypothetical protein (RRP5) 0.19 OrthoFinder
XM_003064819.1 MicpuC2_54811, 54811 Suppressor of forked; S1 domain [Interproscan]. 0.06 OrthoFinder
lcl|BLLF01003094.1_cds_GFH26329.1_20806 HaLaN_24462, GFH26329 Suppressor of forked [Interproscan]. 0.06 OrthoFinder
lcl|BLLF01003604.1_cds_GFH27756.1_22233 HaLaN_26132, GFH27756 Hypothetical protein 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW55969.1_10165 PRW55969 RNA binding rRNA processing 0.12 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20900.1_4989 PRW20900 RRP5-like protein 0.11 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497028.1_757 KAA8497028 RRNA biogenesis protein rrp5 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR003029 S1_domain 527 591
IPR003029 S1_domain 1392 1465
No external refs found!