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  5. PTI_19G01830.1

PTI_19G01830.1


Description : Ribosomal protein L30, ferredoxin-like fold domain; Ribosomal protein L30, N-terminal [Interproscan].


Gene families : OG_01_0002109 (OrthoFinder) Phylogenetic Tree(s): OG0002109_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_19G01830.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020909.42 tig00020909_g15363.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.37 OrthoFinder
Cre12.g537800 30791776, RPL7 Protein biosynthesis.cytosolic ribosome.large subunit... 0.37 OrthoFinder
Cz10g26010.t1 No alias Hypothetical protein 0.16 OrthoFinder
Dusal.1371s00001.1 33191881 Ribosomal protein L30, ferredoxin-like fold domain;... 0.31 OrthoFinder
EOD11472 No alias Ribosomal protein L30, N-terminal; Ribosomal protein... 0.24 OrthoFinder
EOD41169 No alias Ribosomal protein L30, N-terminal; Ribosomal protein... 0.24 OrthoFinder
OT_03G01610.1 No alias Ribosomal protein L30, N-terminal; Ribosomal protein... 0.16 OrthoFinder
Sro264_g102550.1 Contig921.g9681 60S ribosomal protein L7 0.51 OrthoFinder
SymbC1.scaffold4779.1 4779.1 Ribosomal protein L30, ferredoxin-like fold domain;... 0.02 OrthoFinder
SymbC1.scaffold680.2 680.2 Ribosomal protein L30, ferredoxin-like fold domain;... 0.15 OrthoFinder
TP02G06700.1 No alias Ribosomal protein L30, ferredoxin-like fold domain;... 0.32 OrthoFinder
Vocar.0034s0005.1 32893109 Ribosomal protein L30, N-terminal; Ribosomal protein... 0.17 OrthoFinder
XM_002500889.1 MICPUN_106801, 106801 Ribosomal protein L30, ferredoxin-like fold domain;... 0.25 OrthoFinder
XM_003056432.1 MicpuC2_31664, 31664 Ribosomal protein L30, ferredoxin-like fold domain;... 0.06 OrthoFinder
lcl|BLLF01000405.1_cds_GFH11454.1_5931 HaLaN_06953, GFH11454 Ribosomal protein L30, N-terminal [Interproscan]. 0.05 OrthoFinder
lcl|BLLF01000775.1_cds_GFH14862.1_9339 HaLaN_10989, GFH14862 Ribosomal protein L30, ferredoxin-like fold domain;... 0.09 OrthoFinder
lcl|LHPG02000024.1_cds_PRW20371.1_5557 PRW20371 60S ribosomal L7-2 0.35 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499623.1_8576 KAA8499623 60S ribosomal protein L7-4 0.15 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004055 argininosuccinate synthase activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006448 regulation of translational elongation IEP Enrichment
BP GO:0006449 regulation of translational termination IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006525 arginine metabolic process IEP Enrichment
BP GO:0006526 arginine biosynthetic process IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009064 glutamine family amino acid metabolic process IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0010628 positive regulation of gene expression IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045727 positive regulation of translation IEP Enrichment
BP GO:0045901 positive regulation of translational elongation IEP Enrichment
BP GO:0045905 positive regulation of translational termination IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0051130 positive regulation of cellular component organization IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051247 positive regulation of protein metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR016082 Ribosomal_L30_ferredoxin-like 79 129
IPR012988 Ribosomal_L30_N 4 74
No external refs found!