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  5. PTI_19G01170.1

PTI_19G01170.1


Description : GAG-pre-integrase domain; Zinc finger, CCHC-type [Interproscan].


Gene families : OG_01_0006725 (OrthoFinder) Phylogenetic Tree(s): OG0006725_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_19G01170.1
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
PTI_00G00390.1 No alias GAG-pre-integrase domain [Interproscan]. 0.04 OrthoFinder
PTI_00G04380.1 No alias GAG-pre-integrase domain; Zinc finger, CCHC-type [Interproscan]. 0.06 OrthoFinder
PTI_07G01580.1 No alias Hypothetical protein 0.06 OrthoFinder
PTI_07G01590.1 No alias Hypothetical protein 0.02 OrthoFinder
PTI_07G01610.1 No alias Hypothetical protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 736 800
IPR001878 Znf_CCHC 415 431
No external refs found!