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  5. PTI_19G00980.1

PTI_19G00980.1


Description : Snf7 family [Interproscan].


Gene families : OG_01_0000736 (OrthoFinder) Phylogenetic Tree(s): OG0000736_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_19G00980.1
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020510.41 tig00020510_g9823.t1 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.04 OrthoFinder
Cpa|evm.model.tig00020830.6 tig00020830_g14387.t1 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.03 OrthoFinder
Cre04.g213450 30791227, VPS2A Vesicle trafficking.endomembrane trafficking.ESCRT... 0.05 OrthoFinder
Cre17.g735400 30782779, VPS2B Vesicle trafficking.endomembrane trafficking.ESCRT... 0.03 OrthoFinder
Sro1334_g263820.1 Contig785.g8786 Charged multivesicular body protein 0.05 OrthoFinder
Sro900_g217890.1 Contig2813.g22567 Body protein 2a 0.02 OrthoFinder
Transcript_contig_54164 54164 Snf7 family [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498509.1_7462 KAA8498509 Charged multivesicular body protein 2b 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497264.1_993 KAA8497264 Charged multivesicular body protein 2a-like 2 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
InterPro domains Description Start Stop
IPR005024 Snf7_fam 17 180
No external refs found!