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  5. PTI_19G00150.1

PTI_19G00150.1


Description : Chaperonin Cpn60/TCP-1 family [Interproscan].


Gene families : OG_01_0002263 (OrthoFinder) Phylogenetic Tree(s): OG0002263_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_19G00150.1
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000789.37 tig00000789_g4131.t1 Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.02 OrthoFinder
Cre09.g397200 30780237, CCT6 Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.03 OrthoFinder
Cz02g02210.t1 No alias Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.04 OrthoFinder
EOD39434 No alias Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.02 OrthoFinder
OT_13G02270.1 No alias Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.02 OrthoFinder
Sro3907_g351830.1 Contig1097.g10637 Complex protein 1 subunit zeta 0.04 OrthoFinder
Sro791_g202900.1 Contig1638.g14756 Thermosome subunit beta (Fragment) 0.04 OrthoFinder
Vocar.0008s0243.1 32897465 Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.02 OrthoFinder
XM_002503159.1 MICPUN_94492, 94492 Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.03 OrthoFinder
XM_003061179.1 MicpuC2_34990, 34990 Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01002792.1_cds_GFH25355.1_19832 HaLaN_23300, GFH25355 Chaperonin complex component 0.04 OrthoFinder
lcl|BLLF01002792.1_cds_GFH25356.1_19833 HaLaN_23301, GFH25356 T-complex 1 subunit zeta 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0019439 aromatic compound catabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901361 organic cyclic compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR002423 Cpn60/TCP-1 32 531
No external refs found!