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  5. PTI_18G02960.1

PTI_18G02960.1


Description : Ribosomal protein L10e/L16 [Interproscan].


Gene families : OG_01_0002492 (OrthoFinder) Phylogenetic Tree(s): OG0002492_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_18G02960.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001424.5 tig00001424_g8704.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder
Cz05g34280.t1 No alias Ribosomal protein L10e/L16 [Interproscan]. 0.09 OrthoFinder
Dusal.0318s00002.1 33185638 Ribosomal protein L10e/L16 [Interproscan]. 0.15 OrthoFinder
EOD11710 No alias Ribosomal protein L10e/L16 [Interproscan]. 0.04 OrthoFinder
EOD35542 No alias Ribosomal protein L10e/L16 [Interproscan]. 0.01 OrthoFinder
OT_03G04340.1 No alias Ribosomal protein L10e/L16 [Interproscan]. 0.15 OrthoFinder
Transcript_contig_89977 89977 Ribosomal protein L10e/L16 [Interproscan]. 0.03 OrthoFinder
Vocar.0033s0178.1 32886367 Ribosomal protein L10e/L16 [Interproscan]. 0.02 OrthoFinder
XM_002507165.1 MICPUN_93045, 93045 Ribosomal protein L10e/L16 [Interproscan]. 0.21 OrthoFinder
XM_003054845.1 MicpuC2_24102, 24102 Ribosomal protein L10e/L16 [Interproscan]. 0.08 OrthoFinder
lcl|LHPG02000022.1_cds_PRW20682.1_5260 PRW20682 60S ribosomal L10-3 0.09 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004107 chorismate synthase activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0031204 posttranslational protein targeting to membrane, translocation IEP Enrichment
CC GO:0031207 Sec62/Sec63 complex IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0042176 regulation of protein catabolic process IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
BP GO:0065002 intracellular protein transmembrane transport IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0071806 protein transmembrane transport IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR016180 Ribosomal_L10e/L16 13 165
No external refs found!