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  5. PTI_18G02010.1

PTI_18G02010.1


Description : Cold-shock protein, DNA-binding [Interproscan].


Gene families : OG_01_0000183 (OrthoFinder) Phylogenetic Tree(s): OG0000183_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_18G02010.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
EOD19945 No alias Cold-shock protein, DNA-binding [Interproscan]. 0.02 OrthoFinder
Sro2322_g323260.1 Contig3734.g28638 Lin-28 homolog A 0.02 OrthoFinder
Sro79_g042740.1 Contig1826.g16081 Sensitive element-binding protein 1 0.07 OrthoFinder
TP04G01980.1 No alias Cold-shock protein, DNA-binding [Interproscan]. 0.03 OrthoFinder
TP22G02730.1 No alias Cold-shock protein, DNA-binding [Interproscan]. 0.04 OrthoFinder
Vocar.0002s0155.1 32890859 Cold-shock protein, DNA-binding; RNA recognition motif... 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57392.1_9400 PRW57392 Phosphatidylinositol:ceramide inositolphosphotransferase... 0.04 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496404.1_133 KAA8496404 Cold shock domain-containing protein 4 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496405.1_134 KAA8496405 Cold shock domain-containing protein 4 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Enrichment
MF GO:0004779 sulfate adenylyltransferase activity IEP Enrichment
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Enrichment
MF GO:0004807 triose-phosphate isomerase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005759 mitochondrial matrix IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Enrichment
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016860 intramolecular oxidoreductase activity IEP Enrichment
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
CC GO:0031974 membrane-enclosed lumen IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
CC GO:0043233 organelle lumen IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
CC GO:0070013 intracellular organelle lumen IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
BP GO:1901135 carbohydrate derivative metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR002059 CSP_DNA-bd 46 110
No external refs found!