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  5. PTI_17G01720.1

PTI_17G01720.1


Description : Ribosomal protein S5, C-terminal; Ribosomal protein S5, N-terminal [Interproscan].


Gene families : OG_01_0002382 (OrthoFinder) Phylogenetic Tree(s): OG0002382_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_17G01720.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020961.135 tig00020961_g16755.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 OrthoFinder
Cre01.g039250 30788560, RPS2 Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 OrthoFinder
Cz06g19150.t1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.09 OrthoFinder
Dusal.0108s00005.1 33189508 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.11 OrthoFinder
EOD22582 No alias Ribosomal protein S5, C-terminal [Interproscan]. 0.05 OrthoFinder
OT_17G01420.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.35 OrthoFinder
Sro693_g188270.1 Contig3212.g25392 40S ribosomal protein S2 (Fragment) 0.47 OrthoFinder
TP10G03790.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.09 OrthoFinder
Transcript_contig_79122 79122 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.07 OrthoFinder
Vocar.0001s0807.1 32884773 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.08 OrthoFinder
XM_002502219.1 MICPUN_90856, 90856 Ribosomal protein S5, N-terminal; Ribosomal protein S5,... 0.12 OrthoFinder
XM_003063973.1 MicpuC2_49763, 49763 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.15 OrthoFinder
lcl|BLLF01000722.1_cds_GFH14405.1_8882 HaLaN_10454, GFH14405 Component of cytosolic 80S ribosome and 40S small subunit 0.01 OrthoFinder
lcl|BLLF01001424.1_cds_GFH19209.1_13686 HaLaN_16121, GFH19209 Component of cytosolic 80S ribosome and 40S small subunit 0.03 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60442.1_4146 PRW60442 40S ribosomal S2-4 0.01 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39136.1_2764 PRW39136 40S ribosomal S2-4 0.18 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497763.1_6716 KAA8497763 40S ribosomal protein S2 0.22 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR005324 Ribosomal_S5_C 170 236
IPR013810 Ribosomal_S5_N 87 151
No external refs found!