1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_15G03790.1

PTI_15G03790.1


Description : Chlorophyll A-B binding protein [Interproscan].


Gene families : OG_01_0000059 (OrthoFinder) Phylogenetic Tree(s): OG0000059_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_15G03790.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
EOD04043 No alias Light harvesting protein [Ensembl]. 0.07 OrthoFinder
EOD04179 No alias Chlorophyll A-B binding protein [Interproscan]. 0.08 OrthoFinder
EOD06381 No alias Light harvesting protein [Ensembl]. 0.07 OrthoFinder
EOD08888 No alias Light harvesting protein [Ensembl]. 0.06 OrthoFinder
EOD09088 No alias Light harvesting protein [Ensembl]. 0.08 OrthoFinder
EOD13767 No alias Light harvesting protein [Ensembl]. 0.09 OrthoFinder
EOD16168 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
EOD17483 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
EOD19212 No alias Chlorophyll A-B binding protein [Interproscan]. 0.01 OrthoFinder
EOD24357 No alias Light harvesting protein [Ensembl]. 0.04 OrthoFinder
EOD28786 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
EOD29856 No alias Light harvesting protein [Ensembl]. 0.03 OrthoFinder
EOD30102 No alias Light harvesting protein [Ensembl]. 0.04 OrthoFinder
EOD31146 No alias Light harvesting protein [Ensembl]. 0.06 OrthoFinder
EOD32547 No alias Light harvesting protein [Ensembl]. 0.05 OrthoFinder
EOD35505 No alias Light harvesting protein [Ensembl]. 0.06 OrthoFinder
EOD38673 No alias Lught harvesting protein [Ensembl]. 0.03 OrthoFinder
EOD41827 No alias Light harvesting protein [Ensembl]. 0.04 OrthoFinder
Sro1043_g234820.1 Contig3084.g24573 Fucoxanthin-chlorophyll a-c binding protein 0.21 OrthoFinder
Sro125_g060100.1 Contig2833.g22721 Fucoxanthin-chlorophyll a-c binding protein 0.23 OrthoFinder
Sro1292_g260030.1 Contig3668.g28344 Fucoxanthin-chlorophyll a-c binding protein 0.04 OrthoFinder
Sro1292_g260040.1 Contig3668.g28345 Fucoxanthin-chlorophyll a-c binding protein 0.23 OrthoFinder
Sro137_g064500.1 Contig3969.g30465 Fucoxanthin-chlorophyll a-c binding protein 0.23 OrthoFinder
Sro1418_g271000.1 Contig4752.g35216 Fucoxanthin-chlorophyll a-c binding protein 0.25 OrthoFinder
Sro1451_g273830.1 Contig4314.g32534 Fucoxanthin-chlorophyll a-c binding protein 0.23 OrthoFinder
Sro147_g067990.1 Contig246.g3022 Chloroplastic 0.22 OrthoFinder
Sro2004_g310410.1 Contig2826.g22657 Fucoxanthin-chlorophyll a-c binding protein 0.21 OrthoFinder
Sro2330_g323570.1 Contig817.g9103 Fucoxanthin-chlorophyll a-c binding protein 0.21 OrthoFinder
Sro238_g095650.1 Contig99.g1211 Fucoxanthin-chlorophyll a-c binding protein 0.22 OrthoFinder
Sro267_g103520.1 Contig4506.g33814 Fucoxanthin-chlorophyll a-c binding protein 0.21 OrthoFinder
Sro267_g103540.1 Contig4506.g33816 Fucoxanthin-chlorophyll a-c binding protein 0.21 OrthoFinder
Sro2721_g335500.1 Contig3512.g27204 Fucoxanthin-chlorophyll a-c binding protein 0.21 OrthoFinder
Sro31_g020150.1 Contig420.g5610 Fucoxanthin-chlorophyll a-c binding protein A, chloroplastic 0.22 OrthoFinder
Sro326_g118250.1 Contig1080.g10513 Fucoxanthin-chlorophyll a-c binding protein 0.22 OrthoFinder
Sro367_g127810.1 Contig623.g7606 Fucoxanthin-chlorophyll a-c binding protein 0.24 OrthoFinder
Sro376_g129680.1 Contig3640.g28118 Fucoxanthin-chlorophyll a-c binding protein 0.19 OrthoFinder
Sro43_g026030.1 Contig2453.g20069 Fucoxanthin-chlorophyll a-c binding protein 0.23 OrthoFinder
Sro518_g158860.1 Contig3565.g27541 Chloroplastic 0.22 OrthoFinder
Sro533_g161680.1 Contig3819.g29336 Fucoxanthin-chlorophyll a-c binding protein 0.21 OrthoFinder
Sro566_g167740.1 Contig3739.g28669 Fucoxanthin-chlorophyll a-c binding protein 0.23 OrthoFinder
Sro6_g005380.1 Contig175.g2043 Fucoxanthin-chlorophyll a-c binding protein 0.22 OrthoFinder
Sro6_g005400.1 Contig175.g2045 Fucoxanthin-chlorophyll a-c binding protein 0.22 OrthoFinder
Sro720_g192680.1 Contig2421.g19829 Fucoxanthin-chlorophyll a-c binding protein 0.22 OrthoFinder
Sro773_g200470.1 Contig1379.g12690 Fucoxanthin-chlorophyll a-c binding protein 0.2 OrthoFinder
Sro7_g006410.1 Contig389.g5294 Fucoxanthin-chlorophyll a-c binding protein 0.24 OrthoFinder
Sro823_g207590.1 Contig3379.g26446 Fucoxanthin-chlorophyll a-c binding protein 0.25 OrthoFinder
SymbC1.scaffold3177.1 3177.1 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold75.5 75.5 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
TP01G10180.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.18 OrthoFinder
TP02G08060.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.2 OrthoFinder
TP03G01950.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.21 OrthoFinder
TP03G01960.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.21 OrthoFinder
TP05G02100.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.21 OrthoFinder
TP20G01530.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.19 OrthoFinder
TP20G01560.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.2 OrthoFinder
TP22G01060.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.17 OrthoFinder
TP22G02570.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.18 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0008883 glutamyl-tRNA reductase activity IEP Enrichment
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0010024 phytochromobilin biosynthetic process IEP Enrichment
BP GO:0010109 regulation of photosynthesis IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0010242 oxygen evolving activity IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Enrichment
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0042548 regulation of photosynthesis, light reaction IEP Enrichment
BP GO:0042549 photosystem II stabilization IEP Enrichment
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
MF GO:0050897 cobalt ion binding IEP Enrichment
BP GO:0051202 phytochromobilin metabolic process IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
MF GO:0098809 nitrite reductase activity IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 40 190
No external refs found!