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  5. PTI_15G02710.1

PTI_15G02710.1


Description : Ribosomal protein L22/L17 [Interproscan].


Gene families : OG_01_0003841 (OrthoFinder) Phylogenetic Tree(s): OG0003841_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_15G02710.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001215.8 tig00001215_g7572.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 OrthoFinder
Cre13.g568900 30784330, RPL17 Protein biosynthesis.cytosolic ribosome.large subunit... 0.51 OrthoFinder
Cz08g22070.t1 No alias Ribosomal protein L22/L17 [Interproscan]. 0.39 OrthoFinder
Dusal.0117s00014.1 33191086 Ribosomal protein L22/L17 [Interproscan]. 0.18 OrthoFinder
EOD18576 No alias Ribosomal protein L22/L17 [Interproscan]. 0.05 OrthoFinder
OT_06G03040.1 No alias Ribosomal protein L22/L17 [Interproscan]. 0.29 OrthoFinder
Sro490_g153560.1 Contig328.g4376 60S ribosomal protein L17 0.54 OrthoFinder
SymbC1.scaffold1979.3 1979.3 Ribosomal protein L22/L17 [Interproscan]. 0.07 OrthoFinder
TP03G04610.1 No alias Ribosomal protein L22/L17 [Interproscan]. 0.43 OrthoFinder
Vocar.0001s0273.1 32884978 Ribosomal protein L22/L17 [Interproscan]. 0.1 OrthoFinder
XM_002499746.1 MICPUN_93345, 93345 Ribosomal protein L22/L17 [Interproscan]. 0.2 OrthoFinder
XM_003062075.1 MicpuC2_49699, 49699 Ribosomal protein L22/L17 [Interproscan]. 0.16 OrthoFinder
lcl|BLLF01000229.1_cds_GFH09375.1_3852 HaLaN_04499, GFH09375 Component of cytosolic 80S ribosome and 60S large subunit 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56515.1_9742 PRW56515 60S ribosomal L17-2 0.1 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499482.1_8435 KAA8499482 60S ribosomal protein L17 0.23 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001063 Ribosomal_L22 17 153
No external refs found!