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  5. PTI_15G01540.1

PTI_15G01540.1


Description : Helix-turn-helix DNA-binding domain of Spt6; Transcription elongation factor Spt6, helix-hairpin-helix motif; Spt6, SH2 domain; S1 domain [Interproscan].


Gene families : OG_01_0003081 (OrthoFinder) Phylogenetic Tree(s): OG0003081_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_15G01540.1
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001486.8 tig00001486_g8925.t1 Chromatin organisation.histone chaperone... 0.03 OrthoFinder
Cre09.g403182 30781077 Chromatin organisation.histone chaperone... 0.03 OrthoFinder
Cz04g35080.t1 No alias Transcription elongation factor Spt6,... 0.03 OrthoFinder
Cz04g35090.t1 No alias Spt6 acidic, N-terminal domain [Interproscan]. 0.05 OrthoFinder
Sro445_g144550.1 Contig1488.g13610 Ty 6 homolog 0.05 OrthoFinder
TP10G03540.1 No alias Transcription elongation factor Spt6, YqgF domain; Spt6,... 0.03 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45415.1_1243 PRW45415 Transcription elongation factor SPT6 isoform A 0.03 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491188.1_5816 KAA8491188 Transcription elongation factor SPT6-like 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006606 protein import into nucleus IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034504 protein localization to nucleus IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051170 import into nucleus IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
CC GO:0071203 WASH complex IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
InterPro domains Description Start Stop
IPR003029 S1_domain 1495 1566
IPR032706 Spt6_HHH 1227 1328
IPR035420 Spt6_SH2 1635 1826
IPR028088 Spt6_HTH_DNA-bd_dom 407 504
No external refs found!