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  5. PTI_15G00710.1

PTI_15G00710.1


Description : Snf7 family [Interproscan].


Gene families : OG_01_0001009 (OrthoFinder) Phylogenetic Tree(s): OG0001009_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_15G00710.1
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Cre06.g282200 30780163, VPS32 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.03 OrthoFinder
Cz15g09150.t1 No alias Snf7 family [Interproscan]. 0.03 OrthoFinder
Dusal.0095s00005.1 33190274 Snf7 family [Interproscan]. 0.03 OrthoFinder
OT_17G02200.1 No alias Snf7 family [Interproscan]. 0.02 OrthoFinder
Sro2675_g334390.1 Contig965.g9898 Sorting-associated protein 32 homolog 0.03 OrthoFinder
Sro740_g195570.1 Contig168.g1896 Body protein 4B 0.06 OrthoFinder
Transcript_contig_55347 55347 Snf7 family [Interproscan]. 0.03 OrthoFinder
Vocar.0029s0193.1 32887587 Snf7 family [Interproscan]. 0.02 OrthoFinder
XM_003064005.1 MicpuC2_46014, 46014 Snf7 family [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000106.1_cds_GFH07620.1_2097 HaLaN_02450, GFH07620 Snf7 family [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494368.1_2898 KAA8494368 Vacuolar-sorting protein snf7 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000814 ESCRT II complex IEP Enrichment
BP GO:0002949 tRNA threonylcarbamoyladenosine modification IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0036452 ESCRT complex IEP Enrichment
BP GO:0070525 tRNA threonylcarbamoyladenosine metabolic process IEP Enrichment
BP GO:0071985 multivesicular body sorting pathway IEP Enrichment
MF GO:0098599 palmitoyl hydrolase activity IEP Enrichment
InterPro domains Description Start Stop
IPR005024 Snf7_fam 28 204
No external refs found!