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  5. PTI_15G00620.1

PTI_15G00620.1


Description : Chlorophyll A-B binding protein [Interproscan].


Gene families : OG_01_0000076 (OrthoFinder) Phylogenetic Tree(s): OG0000076_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_15G00620.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
EOD03771 No alias Light-harvesting family [Ensembl]. 0.01 OrthoFinder
EOD05780 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
EOD07752 No alias Chlorophyll A-B binding protein [Interproscan]. 0.07 OrthoFinder
EOD08157 No alias Light harvesting protein [Ensembl]. 0.09 OrthoFinder
EOD15375 No alias Light harvesting protein [Ensembl]. 0.01 OrthoFinder
EOD18950 No alias Light harvesting protein [Ensembl]. 0.09 OrthoFinder
EOD19744 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
EOD23225 No alias Light harvesting protein [Ensembl]. 0.01 OrthoFinder
EOD24660 No alias Light harvesting protein [Ensembl]. 0.09 OrthoFinder
EOD25560 No alias Light harvesting protein [Ensembl]. 0.01 OrthoFinder
EOD26056 No alias Light harvesting protein [Ensembl]. 0.09 OrthoFinder
EOD33861 No alias Light harvesting protein [Ensembl]. 0.07 OrthoFinder
Sro101_g051590.1 Contig348.g4712 Fucoxanthin-chlorophyll a-c binding protein 0.19 OrthoFinder
Sro1151_g246800.1 Contig4710.g35031 Chloroplastic 0.21 OrthoFinder
Sro132_g062570.1 Contig2745.g22100 Chloroplastic 0.03 OrthoFinder
Sro1347_g264950.1 Contig4640.g34581 B binding protein 6, chloroplastic 0.03 OrthoFinder
Sro1430_g271970.1 Contig4579.g34184 B binding protein L1818, chloroplastic 0.02 OrthoFinder
Sro1506_g278310.1 Contig3888.g29862 Chloroplastic 0.02 OrthoFinder
Sro234_g094380.1 Contig3223.g25485 Fucoxanthin-chlorophyll a-c binding protein 0.19 OrthoFinder
Sro2423_g327210.1 Contig3569.g27581 Chloroplastic 0.03 OrthoFinder
Sro263_g102180.1 Contig612.g7540 Fucoxanthin-chlorophyll a-c binding protein A, chloroplastic 0.19 OrthoFinder
Sro453_g146050.1 Contig1693.g15162 B binding protein CP29 0.19 OrthoFinder
Sro652_g181650.1 Contig2024.g17318 Chloroplastic 0.03 OrthoFinder
Sro656_g182410.1 Contig256.g3152 Chloroplastic 0.02 OrthoFinder
Sro698_g189300.1 Contig480.g6500 Chlorophyll a 0.03 OrthoFinder
Sro698_g189330.1 Contig480.g6503 Chloroplastic 0.03 OrthoFinder
Sro829_g208070.1 Contig1016.g10166 Chloroplastic 0.03 OrthoFinder
Sro844_g209920.1 Contig403.g5457 Chloroplastic 0.02 OrthoFinder
TP05G03540.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.15 OrthoFinder
TP09G03710.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.15 OrthoFinder
TP18G01450.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.15 OrthoFinder
TP23G00990.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Vocar.0020s0067.1 32886585 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498066.1_7019 KAA8498066 Chlorophyll a-b binding protein of LHCII type III, chloroplastic 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499797.1_8750 KAA8499797 Chlorophyll a-b binding protein 1B-21, chloroplastic 0.01 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496609.1_338 KAA8496609 Chlorophyll a-b binding protein, chloroplastic 0.06 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8493980.1_3844 KAA8493980 Chlorophyll a-b binding protein 1B-21, chloroplastic 0.01 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492420.1_9113 KAA8492420 Chlorophyll a-b binding protein 1B-21, chloroplastic 0.01 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491490.1_6300 KAA8491490 Fucoxanthin-chlorophyll a-c binding protein, chloroplastic 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004655 porphobilinogen synthase activity IEP Enrichment
MF GO:0004784 superoxide dismutase activity IEP Enrichment
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
MF GO:0008171 O-methyltransferase activity IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
BP GO:0008610 lipid biosynthetic process IEP Enrichment
MF GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity IEP Enrichment
MF GO:0008883 glutamyl-tRNA reductase activity IEP Enrichment
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0010109 regulation of photosynthesis IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0010242 oxygen evolving activity IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
BP GO:0015994 chlorophyll metabolic process IEP Enrichment
BP GO:0015995 chlorophyll biosynthetic process IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Enrichment
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0016849 phosphorus-oxygen lyase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0042548 regulation of photosynthesis, light reaction IEP Enrichment
BP GO:0042549 photosystem II stabilization IEP Enrichment
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0046148 pigment biosynthetic process IEP Enrichment
MF GO:0046406 magnesium protoporphyrin IX methyltransferase activity IEP Enrichment
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEP Enrichment
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
MF GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
MF GO:0098809 nitrite reductase activity IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 45 188
No external refs found!