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Description : Chlorophyll A-B binding protein [Interproscan].
Gene families : OG_01_0000076 (OrthoFinder) Phylogenetic Tree(s): OG0000076_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: PTI_15G00600.1 | |
| Cluster | HCCA: Cluster_8 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cz16g02040.t1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.01 | OrthoFinder | |
| EOD07752 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.07 | OrthoFinder | |
| EOD08157 | No alias | Light harvesting protein [Ensembl]. | 0.09 | OrthoFinder | |
| EOD18950 | No alias | Light harvesting protein [Ensembl]. | 0.09 | OrthoFinder | |
| EOD19744 | No alias | Light harvesting protein [Ensembl]. | 0.02 | OrthoFinder | |
| EOD24660 | No alias | Light harvesting protein [Ensembl]. | 0.09 | OrthoFinder | |
| EOD25053 | No alias | Light-harvesting family [Ensembl]. | 0.02 | OrthoFinder | |
| EOD26056 | No alias | Light harvesting protein [Ensembl]. | 0.09 | OrthoFinder | |
| EOD33861 | No alias | Light harvesting protein [Ensembl]. | 0.06 | OrthoFinder | |
| Sro101_g051590.1 | Contig348.g4712 | Fucoxanthin-chlorophyll a-c binding protein | 0.25 | OrthoFinder | |
| Sro1151_g246800.1 | Contig4710.g35031 | Chloroplastic | 0.25 | OrthoFinder | |
| Sro132_g062570.1 | Contig2745.g22100 | Chloroplastic | 0.04 | OrthoFinder | |
| Sro1347_g264950.1 | Contig4640.g34581 | B binding protein 6, chloroplastic | 0.04 | OrthoFinder | |
| Sro1430_g271970.1 | Contig4579.g34184 | B binding protein L1818, chloroplastic | 0.02 | OrthoFinder | |
| Sro1506_g278310.1 | Contig3888.g29862 | Chloroplastic | 0.02 | OrthoFinder | |
| Sro234_g094380.1 | Contig3223.g25485 | Fucoxanthin-chlorophyll a-c binding protein | 0.26 | OrthoFinder | |
| Sro2423_g327210.1 | Contig3569.g27581 | Chloroplastic | 0.04 | OrthoFinder | |
| Sro263_g102180.1 | Contig612.g7540 | Fucoxanthin-chlorophyll a-c binding protein A, chloroplastic | 0.24 | OrthoFinder | |
| Sro453_g146050.1 | Contig1693.g15162 | B binding protein CP29 | 0.25 | OrthoFinder | |
| Sro652_g181650.1 | Contig2024.g17318 | Chloroplastic | 0.04 | OrthoFinder | |
| Sro656_g182410.1 | Contig256.g3152 | Chloroplastic | 0.02 | OrthoFinder | |
| Sro698_g189300.1 | Contig480.g6500 | Chlorophyll a | 0.04 | OrthoFinder | |
| Sro698_g189330.1 | Contig480.g6503 | Chloroplastic | 0.04 | OrthoFinder | |
| Sro829_g208070.1 | Contig1016.g10166 | Chloroplastic | 0.04 | OrthoFinder | |
| Sro844_g209920.1 | Contig403.g5457 | Chloroplastic | 0.02 | OrthoFinder | |
| SymbC1.scaffold5079.2 | 5079.2 | Chlorophyll A-B binding protein [Interproscan]. | 0.01 | OrthoFinder | |
| TP01G11130.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.03 | OrthoFinder | |
| TP05G03540.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.2 | OrthoFinder | |
| TP09G03710.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.21 | OrthoFinder | |
| TP18G01450.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.21 | OrthoFinder | |
| lcl|VRMN01000001.1_cds_KAA8498066.1_7019 | KAA8498066 | Chlorophyll a-b binding protein of LHCII type III, chloroplastic | 0.02 | OrthoFinder | |
| lcl|VRMN01000001.1_cds_KAA8499797.1_8750 | KAA8499797 | Chlorophyll a-b binding protein 1B-21, chloroplastic | 0.02 | OrthoFinder | |
| lcl|VRMN01000002.1_cds_KAA8496609.1_338 | KAA8496609 | Chlorophyll a-b binding protein, chloroplastic | 0.05 | OrthoFinder | |
| lcl|VRMN01000005.1_cds_KAA8493980.1_3844 | KAA8493980 | Chlorophyll a-b binding protein 1B-21, chloroplastic | 0.02 | OrthoFinder | |
| lcl|VRMN01000009.1_cds_KAA8492420.1_9113 | KAA8492420 | Chlorophyll a-b binding protein 1B-21, chloroplastic | 0.02 | OrthoFinder | |
| lcl|VRMN01000013.1_cds_KAA8491490.1_6300 | KAA8491490 | Fucoxanthin-chlorophyll a-c binding protein, chloroplastic | 0.05 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008883 | glutamyl-tRNA reductase activity | IEP | Enrichment |
| MF | GO:0008942 | nitrite reductase [NAD(P)H] activity | IEP | Enrichment |
| CC | GO:0009521 | photosystem | IEP | Enrichment |
| CC | GO:0009523 | photosystem II | IEP | Enrichment |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | Enrichment |
| BP | GO:0010024 | phytochromobilin biosynthetic process | IEP | Enrichment |
| BP | GO:0010109 | regulation of photosynthesis | IEP | Enrichment |
| BP | GO:0010207 | photosystem II assembly | IEP | Enrichment |
| MF | GO:0010242 | oxygen evolving activity | IEP | Enrichment |
| BP | GO:0015979 | photosynthesis | IEP | Enrichment |
| MF | GO:0016491 | oxidoreductase activity | IEP | Enrichment |
| MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | Enrichment |
| MF | GO:0016636 | oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor | IEP | Enrichment |
| MF | GO:0016661 | oxidoreductase activity, acting on other nitrogenous compounds as donors | IEP | Enrichment |
| MF | GO:0016854 | racemase and epimerase activity | IEP | Enrichment |
| MF | GO:0016857 | racemase and epimerase activity, acting on carbohydrates and derivatives | IEP | Enrichment |
| MF | GO:0016872 | intramolecular lyase activity | IEP | Enrichment |
| CC | GO:0019898 | extrinsic component of membrane | IEP | Enrichment |
| MF | GO:0020037 | heme binding | IEP | Enrichment |
| BP | GO:0022607 | cellular component assembly | IEP | Enrichment |
| BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Enrichment |
| BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Enrichment |
| BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Enrichment |
| BP | GO:0042548 | regulation of photosynthesis, light reaction | IEP | Enrichment |
| BP | GO:0042549 | photosystem II stabilization | IEP | Enrichment |
| BP | GO:0043467 | regulation of generation of precursor metabolites and energy | IEP | Enrichment |
| BP | GO:0043933 | protein-containing complex subunit organization | IEP | Enrichment |
| MF | GO:0046857 | oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor | IEP | Enrichment |
| MF | GO:0046906 | tetrapyrrole binding | IEP | Enrichment |
| MF | GO:0050897 | cobalt ion binding | IEP | Enrichment |
| BP | GO:0051202 | phytochromobilin metabolic process | IEP | Enrichment |
| BP | GO:0055114 | obsolete oxidation-reduction process | IEP | Enrichment |
| BP | GO:0065003 | protein-containing complex assembly | IEP | Enrichment |
| CC | GO:0098796 | membrane protein complex | IEP | Enrichment |
| MF | GO:0098809 | nitrite reductase activity | IEP | Enrichment |
| CC | GO:1902494 | catalytic complex | IEP | Enrichment |
| CC | GO:1990204 | oxidoreductase complex | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022796 | Chloroa_b-bind | 51 | 194 |
| No external refs found! |