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  5. PTI_13G02890.1

PTI_13G02890.1


Description : Zinc finger, CCHC-type; TOPRIM domain; DNA topoisomerase, type IA, central [Interproscan].


Gene families : OG_01_0001163 (OrthoFinder) Phylogenetic Tree(s): OG0001163_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_13G02890.1
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
OT_03G04080.1 No alias Zinc finger, CCHC-type; DNA topoisomerase, type IA,... 0.03 OrthoFinder
Sro1051_g235700.1 Contig3964.g30407 Topoisomerase 3-beta-1 0.02 OrthoFinder
Sro287_g108620.1 Contig252.g3103 Topoisomerase 3-alpha 0.03 OrthoFinder
Vocar.0009s0242.1 32893315 Zinc finger, CCHC-type; TOPRIM domain; DNA... 0.03 OrthoFinder
XM_002499819.1 MICPUN_79030, 79030 DNA topoisomerase, type IA, central; TOPRIM domain... 0.01 OrthoFinder
XM_003055242.1 MicpuC2_13292, 13292 TOPRIM domain; DNA topoisomerase, type IA, central... 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW60157.1_6321 PRW60157 DNA topoisomerase 3-beta isoform X1 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497841.1_6794 KAA8497841 DNA topoisomerase 3 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493337.1_9638 KAA8493337 DNA topoisomerase 3-beta 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003916 DNA topoisomerase activity IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0007275 multicellular organism development IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016409 palmitoyltransferase activity IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030119 AP-type membrane coat adaptor complex IEP Enrichment
CC GO:0030131 clathrin adaptor complex IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
BP GO:0032501 multicellular organismal process IEP Enrichment
BP GO:0032502 developmental process IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0048856 anatomical structure development IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
InterPro domains Description Start Stop
IPR013497 Topo_IA_cen 224 662
IPR001878 Znf_CCHC 991 1008
IPR006171 TOPRIM_domain 45 207
No external refs found!