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  5. PTI_13G02100.1

PTI_13G02100.1


Description : Zinc finger, GRF-type; Helicase, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000107 (OrthoFinder) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_13G02100.1
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000789.41 tig00000789_g4134.t1 ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre12.g490150 30793094 ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz02g03170.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.02 OrthoFinder
Cz10g20100.t1 No alias ATP-dependent DNA helicase RecQ, zinc-binding domain;... 0.03 OrthoFinder
Cz12g21050.t1 No alias ATP-dependent DNA helicase RecQ, zinc-binding domain;... 0.03 OrthoFinder
Dusal.0020s00028.1 33193689 Helicase, C-terminal; RQC domain; ATP-dependent DNA... 0.03 OrthoFinder
OT_03G01700.1 No alias Helicase, C-terminal; RQC domain; ATP-dependent DNA... 0.04 OrthoFinder
OT_04G00490.1 No alias DEAD/DEAH box helicase domain; HRDC domain; Helicase,... 0.04 OrthoFinder
OT_05G04280.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
Sro108_g054090.1 Contig2294.g18989 Syndrome ATP-dependent helicase homolog 0.02 OrthoFinder
Sro83_g044440.1 Contig4450.g33418 Syndrome ATP-dependent helicase homolog 0.05 OrthoFinder
Sro9_g007280.1 Contig4120.g31496 Probable Werner syndrome ATP-dependent helicase homolog 1 0.03 OrthoFinder
Vocar.0048s0026.1 32893654 Zinc finger, CCHC-type; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
XM_002502498.1 MICPUN_50295, 50295 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
XM_003055181.1 MicpuC2_12297, 12297 Helicase, C-terminal; ATP-dependent DNA helicase RecQ,... 0.04 OrthoFinder
XM_003062797.1 MicpuC2_52663, 52663 ATP-dependent DNA helicase 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004525 ribonuclease III activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 983 1078
IPR011545 DEAD/DEAH_box_helicase_dom 734 906
IPR010666 Znf_GRF 473 516
No external refs found!