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  5. PTI_13G00310.1

PTI_13G00310.1


Description : Reverse transcriptase, RNA-dependent DNA polymerase [Interproscan].


Gene families : OG_01_0000066 (OrthoFinder) Phylogenetic Tree(s): OG0000066_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_13G00310.1
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
PTI_00G00190.1 No alias Hypothetical protein 0.04 OrthoFinder
PTI_00G01070.1 No alias Hypothetical protein 0.01 OrthoFinder
PTI_00G02240.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.02 OrthoFinder
PTI_00G04610.1 No alias Hypothetical protein 0.01 OrthoFinder
PTI_01G01660.1 No alias Hypothetical protein 0.02 OrthoFinder
PTI_01G08060.1 No alias Hypothetical protein 0.02 OrthoFinder
PTI_01G11820.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
PTI_01G11830.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
PTI_03G05880.1 No alias Hypothetical protein 0.03 OrthoFinder
PTI_03G05920.1 No alias Hypothetical protein 0.02 OrthoFinder
PTI_03G05930.1 No alias Hypothetical protein 0.03 OrthoFinder
PTI_03G05950.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.02 OrthoFinder
PTI_05G04520.1 No alias Hypothetical protein 0.04 OrthoFinder
PTI_09G01500.1 No alias Hypothetical protein 0.03 OrthoFinder
PTI_09G01550.1 No alias Hypothetical protein 0.03 OrthoFinder
PTI_09G02860.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
PTI_10G01700.1 No alias Hypothetical protein 0.03 OrthoFinder
PTI_12G02220.1 No alias Hypothetical protein 0.02 OrthoFinder
PTI_12G02230.1 No alias Hypothetical protein 0.04 OrthoFinder
PTI_16G00090.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
PTI_16G00100.1 No alias Hypothetical protein 0.03 OrthoFinder
PTI_17G02300.1 No alias Hypothetical protein 0.01 OrthoFinder
PTI_18G02870.1 No alias Hypothetical protein 0.03 OrthoFinder
PTI_20G00040.1 No alias Hypothetical protein 0.03 OrthoFinder
PTI_22G02670.1 No alias Hypothetical protein 0.04 OrthoFinder
PTI_27G00060.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
PTI_27G00070.1 No alias Hypothetical protein 0.03 OrthoFinder
PTI_31G00090.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
PTI_31G00950.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
PTI_31G00960.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000339 RNA cap binding IEP Enrichment
MF GO:0000340 RNA 7-methylguanosine cap binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0005436 sodium:phosphate symporter activity IEP Enrichment
MF GO:0005506 iron ion binding IEP Enrichment
BP GO:0006213 pyrimidine nucleoside metabolic process IEP Enrichment
BP GO:0006772 thiamine metabolic process IEP Enrichment
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Enrichment
BP GO:0009228 thiamine biosynthetic process IEP Enrichment
MF GO:0015081 sodium ion transmembrane transporter activity IEP Enrichment
MF GO:0015294 solute:cation symporter activity IEP Enrichment
MF GO:0015370 solute:sodium symporter activity IEP Enrichment
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
CC GO:0042597 periplasmic space IEP Enrichment
BP GO:0042723 thiamine-containing compound metabolic process IEP Enrichment
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Enrichment
BP GO:0044341 sodium-dependent phosphate transport IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 1328 1544
No external refs found!