PTI_12G03630.1

Description : SLIDE domain; Helicase, C-terminal; SNF2-related, N-terminal domain [Interproscan].

Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: PTI_12G03630.1
Cluster	HCCA: Cluster_53

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00021623.13	tig00021623_g23013.t1	RNA biosynthesis.transcriptional activation.PHD finger...	0.01	OrthoFinder
Cre03.g158550	30787160	CHD3-type chromatin-remodeling factor PICKLE...	0.03	OrthoFinder
Cre09.g390000	30781417	RNA biosynthesis.transcriptional activation.PHD finger...	0.02	OrthoFinder
Cre12.g508150	30793288	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder
Cz02g31160.t1	No alias	Helicase, C-terminal; SLIDE domain; SNF2-related,...	0.02	OrthoFinder
Cz19g07040.t1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain;...	0.03	OrthoFinder
Dusal.0024s00040.1	33202173	SNF2-related, N-terminal domain [Interproscan].	0.01	OrthoFinder
Dusal.0047s00031.1	33194295	Helicase, C-terminal; SLIDE domain; ISWI, HAND domain;...	0.02	OrthoFinder
Dusal.0280s00012.1	33203409	SNF2-related, N-terminal domain [Interproscan].	0.02	OrthoFinder
Dusal.0357s00004.1	33189829	SNF2-related, N-terminal domain; Helicase, C-terminal;...	0.03	OrthoFinder
EOD18155	No alias	High mobility group box domain; ISWI, HAND domain;...	0.04	OrthoFinder
EOD31071	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.02	OrthoFinder
EOD33503	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.02	OrthoFinder
EOD36557	No alias	SNF2-related, N-terminal domain [Interproscan].	0.02	OrthoFinder
EOD36957	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.02	OrthoFinder
EOD41894	No alias	SNF2-related, N-terminal domain [Interproscan].	0.01	OrthoFinder
EOD41895	No alias	Helicase, C-terminal [Interproscan].	0.01	OrthoFinder
EOD41956	No alias	Chromo domain; Helicase, C-terminal; SNF2-related,...	0.01	OrthoFinder
OT_01G05670.1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain;...	0.05	OrthoFinder
OT_06G03660.1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain;...	0.04	OrthoFinder
OT_07G04020.1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.02	OrthoFinder
OT_07G04400.1	No alias	Helicase, C-terminal; ISWI, HAND domain; SNF2-related,...	0.02	OrthoFinder
OT_11G00460.1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain;...	0.04	OrthoFinder
Sro1151_g246720.1	Contig4710.g35023	CHD3-type chromatin-remodeling factor	0.02	OrthoFinder
Sro125_g060200.1	Contig2833.g22731	Chromodomain-helicase-DNA-binding protein	0.05	OrthoFinder
Sro1796_g298120.1	Contig441.g5925	Probable chromatin-remodeling complex ATPase chain	0.02	OrthoFinder
Sro19_g013190.1	Contig446.g5983	CHD3-type chromatin-remodeling factor	0.03	OrthoFinder
Sro29_g019150.1	Contig1384.g12758	CHD3-type chromatin-remodeling factor CHR7	0.02	OrthoFinder
Sro358_g125960.1	Contig1210.g11383	Probable chromatin-remodeling complex ATPase chain	0.02	OrthoFinder
Sro386_g131880.1	Contig4061.g31129	Regulator of chromatin subfamily A containing DEAD/H box 1	0.02	OrthoFinder
Sro463_g148220.1	Contig3968.g30431	Probable chromatin-remodeling complex ATPase chain	0.02	OrthoFinder
Transcript_contig_55210	55210	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.01	OrthoFinder
Vocar.0004s0442.1	32889776	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.01	OrthoFinder
XM_002502289.1	MICPUN_58978, 58978	SNF2 super family	0.02	OrthoFinder
XM_002503125.1	MICPUN_91017, 91017	SNF2 super family	0.02	OrthoFinder
XM_002507782.1	MICPUN_60518, 60518	SNF2 super family	0.03	OrthoFinder
XM_003061151.1	MicpuC2_60694, 60694	SNF2 super family	0.02	OrthoFinder
lcl\|BLLF01000001.1_cds_GFH05550.1_27	HaLaN_00030, GFH05550	SNF2-related, N-terminal domain [Interproscan].	0.01	OrthoFinder
lcl\|BLLF01000629.1_cds_GFH13581.1_8058	HaLaN_09499, GFH13581	SNF2-related, N-terminal domain [Interproscan].	0.02	OrthoFinder
lcl\|LHPG02000008.1_cds_PRW56740.1_9705	PRW56740	Chromatin-remodeling complex ATPase chain	0.02	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8496039.1_2037	KAA8496039	ATP-dependent DNA helicase DDM1	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	Enrichment
BP	GO:0000723	telomere maintenance	IEP	Enrichment
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003689	DNA clamp loader activity	IEP	Enrichment
MF	GO:0004827	proline-tRNA ligase activity	IEP	Enrichment
MF	GO:0005096	GTPase activator activity	IEP	Enrichment
MF	GO:0005198	structural molecule activity	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
CC	GO:0005643	nuclear pore	IEP	Enrichment
CC	GO:0005663	DNA replication factor C complex	IEP	Enrichment
CC	GO:0005694	chromosome	IEP	Enrichment
CC	GO:0005737	cytoplasm	IEP	Enrichment
BP	GO:0006259	DNA metabolic process	IEP	Enrichment
BP	GO:0006433	prolyl-tRNA aminoacylation	IEP	Enrichment
BP	GO:0006810	transport	IEP	Enrichment
BP	GO:0006886	intracellular protein transport	IEP	Enrichment
BP	GO:0006887	exocytosis	IEP	Enrichment
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	Enrichment
BP	GO:0006996	organelle organization	IEP	Enrichment
MF	GO:0008047	enzyme activator activity	IEP	Enrichment
BP	GO:0008104	protein localization	IEP	Enrichment
BP	GO:0015031	protein transport	IEP	Enrichment
BP	GO:0016192	vesicle-mediated transport	IEP	Enrichment
MF	GO:0016887	ATPase	IEP	Enrichment
MF	GO:0017056	structural constituent of nuclear pore	IEP	Enrichment
BP	GO:0022406	membrane docking	IEP	Enrichment
CC	GO:0030117	membrane coat	IEP	Enrichment
CC	GO:0030120	vesicle coat	IEP	Enrichment
CC	GO:0030126	COPI vesicle coat	IEP	Enrichment
MF	GO:0030234	enzyme regulator activity	IEP	Enrichment
MF	GO:0030695	GTPase regulator activity	IEP	Enrichment
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Enrichment
BP	GO:0032200	telomere organization	IEP	Enrichment
BP	GO:0032940	secretion by cell	IEP	Enrichment
CC	GO:0032991	protein-containing complex	IEP	Enrichment
BP	GO:0033036	macromolecule localization	IEP	Enrichment
MF	GO:0035091	phosphatidylinositol binding	IEP	Enrichment
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Enrichment
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Enrichment
BP	GO:0045184	establishment of protein localization	IEP	Enrichment
BP	GO:0046903	secretion	IEP	Enrichment
BP	GO:0046907	intracellular transport	IEP	Enrichment
BP	GO:0048278	vesicle docking	IEP	Enrichment
BP	GO:0051179	localization	IEP	Enrichment
BP	GO:0051234	establishment of localization	IEP	Enrichment
BP	GO:0051276	chromosome organization	IEP	Enrichment
BP	GO:0051640	organelle localization	IEP	Enrichment
BP	GO:0051641	cellular localization	IEP	Enrichment
BP	GO:0051649	establishment of localization in cell	IEP	Enrichment
BP	GO:0060249	anatomical structure homeostasis	IEP	Enrichment
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Enrichment
BP	GO:0071702	organic substance transport	IEP	Enrichment
BP	GO:0071705	nitrogen compound transport	IEP	Enrichment
MF	GO:0098772	molecular function regulator	IEP	Enrichment
CC	GO:0098796	membrane protein complex	IEP	Enrichment
CC	GO:0099023	vesicle tethering complex	IEP	Enrichment
BP	GO:0140029	exocytic process	IEP	Enrichment
BP	GO:0140056	organelle localization by membrane tethering	IEP	Enrichment
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Enrichment
BP	GO:0140352	export from cell	IEP	Enrichment
CC	GO:0140513	nuclear protein-containing complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	479	592
IPR000330	SNF2_N	181	457
IPR015195	SLIDE	978	1062

External Links

No external refs found!

PTI_12G03630.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation