1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_12G03380.1

PTI_12G03380.1


Description : K Homology domain, type 1; Splicing factor 1, helix-hairpin domain [Interproscan].


Gene families : OG_01_0001291 (OrthoFinder) Phylogenetic Tree(s): OG0001291_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_12G03380.1
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
Cre09.g386731 30780511 RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder
Cz07g11130.t1 No alias K Homology domain, type 1; Splicing factor 1,... 0.02 OrthoFinder
Dusal.0246s00002.1 33197696 Splicing factor 1, helix-hairpin domain; RNA recognition... 0.02 OrthoFinder
Sro59_g034220.1 Contig571.g7268 Branchpoint-bridging protein 0.02 OrthoFinder
UNPLg00623.t1 No alias K Homology domain, type 1; Splicing factor 1,... 0.02 OrthoFinder
lcl|LHPG02000022.1_cds_PRW20729.1_5273 PRW20729 Branchpoint-bridging-like 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 257 329
IPR032570 SF1-HH 150 231
No external refs found!