PTI_12G02780.1

Description : High mobility group box domain [Interproscan].

Gene families : OG_01_0000118 (OrthoFinder) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: PTI_12G02780.1
Cluster	HCCA: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000615.46	tig00000615_g2575.t1	No description available	0.01	OrthoFinder
Cre06.g261450	30780082	No description available	0.04	OrthoFinder
Cre11.g480950	30775842	No description available	0.02	OrthoFinder
OT_15G02920.1	No alias	High mobility group box domain [Interproscan].	0.02	OrthoFinder
Sro620_g176590.1	Contig2122.g17926	Group protein B3	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0004451	isocitrate lyase activity	IEP	Enrichment
MF	GO:0004474	malate synthase activity	IEP	Enrichment
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Enrichment
BP	GO:0006097	glyoxylate cycle	IEP	Enrichment
BP	GO:0006334	nucleosome assembly	IEP	Enrichment
MF	GO:0016833	oxo-acid-lyase activity	IEP	Enrichment
CC	GO:0032991	protein-containing complex	IEP	Enrichment
CC	GO:0032993	protein-DNA complex	IEP	Enrichment
BP	GO:0034728	nucleosome organization	IEP	Enrichment
CC	GO:0044815	DNA packaging complex	IEP	Enrichment
BP	GO:0046487	glyoxylate metabolic process	IEP	Enrichment
MF	GO:0046912	acyltransferase, acyl groups converted into alkyl on transfer	IEP	Enrichment
BP	GO:0065004	protein-DNA complex assembly	IEP	Enrichment
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR009071	HMG_box_dom	117	143
IPR009071	HMG_box_dom	32	100

External Links

No external refs found!