1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_12G01390.1

PTI_12G01390.1


Description : Histone H2A, C-terminal domain; Histone H2A/H2B/H3 [Interproscan].


Gene families : OG_01_0000046 (OrthoFinder) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_12G01390.1
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021108.27 tig00021108_g18317.t1 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder
EOD31616 No alias Putative histone H2A [Ensembl]. 0.01 OrthoFinder
OT_02G00110.1 No alias Histone H2A/H2B/H3; Histone H2A, C-terminal domain... 0.05 OrthoFinder
Sro311_g114190.1 Contig909.g9534 Histone H2A 0.05 OrthoFinder
Sro392_g133380.1 Contig4514.g33844 Histone H2A 0.04 OrthoFinder
Sro470_g149450.1 Contig850.g9339 Histone H2A 0.03 OrthoFinder
XM_002504498.1 MICPUN_107416, 107416 Hypothetical protein (H2A) 0.02 OrthoFinder
XM_003059786.1 MicpuC2_27647, 27647 Histone H2A 0.04 OrthoFinder
lcl|BLLF01002571.1_cds_GFH24563.1_19040 HaLaN_22382, GFH24563 Histone H2A 0.01 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60758.1_4580 PRW60758 Putative histone H2A variant 3 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000444 MIS12/MIND type complex IEP Enrichment
CC GO:0000818 nuclear MIS12/MIND complex IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0019207 kinase regulator activity IEP Enrichment
MF GO:0019887 protein kinase regulator activity IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 151 184
IPR007125 Histone_H2A/H2B/H3 63 150
No external refs found!