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  5. PTI_12G00920.1

PTI_12G00920.1


Description : Histone deacetylase domain [Interproscan].


Gene families : OG_01_0000505 (OrthoFinder) Phylogenetic Tree(s): OG0000505_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_12G00920.1
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000215.121 tig00000215_g18663.t1 Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder
Cre09.g387393 30780858 Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder
Cz15g12200.t1 No alias Histone deacetylase domain [Interproscan]. 0.02 OrthoFinder
Dusal.0001s00049.1 33198829 Histone deacetylase domain [Interproscan]. 0.02 OrthoFinder
Dusal.0020s00020.1 33193729 Histone deacetylase domain [Interproscan]. 0.01 OrthoFinder
EOD03651 No alias Histone deacetylase domain [Interproscan]. 0.02 OrthoFinder
Sro388_g132310.1 Contig4393.g33005 Probable histone deacetylase 1-B 0.02 OrthoFinder
Vocar.0018s0198.1 32898523 Histone deacetylase domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003689 DNA clamp loader activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005663 DNA replication factor C complex IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006650 glycerophospholipid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
BP GO:0009235 cobalamin metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
CC GO:0016593 Cdc73/Paf1 complex IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0031123 RNA 3'-end processing IEP Enrichment
BP GO:0031124 mRNA 3'-end processing IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046488 phosphatidylinositol metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0098533 ATPase dependent transmembrane transport complex IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
CC GO:1902495 transmembrane transporter complex IEP Enrichment
CC GO:1904949 ATPase complex IEP Enrichment
CC GO:1990351 transporter complex IEP Enrichment
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 24 315
No external refs found!