PTI_12G00850.1

Description : Helicase, C-terminal; High mobility group box domain; SLIDE domain; SNF2-related, N-terminal domain [Interproscan].

Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: PTI_12G00850.1
Cluster	HCCA: Cluster_53

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000217.25	tig00000217_g19158.t1	Chromatin structure-remodeling complex protein SYD...	0.02	OrthoFinder
Cre03.g158550	30787160	CHD3-type chromatin-remodeling factor PICKLE...	0.01	OrthoFinder
Cre07.g325700	30774388	ATP-dependent helicase BRM OS=Arabidopsis thaliana	0.03	OrthoFinder
Cre08.g377200	30773522	CHD3-type chromatin-remodeling factor PICKLE...	0.02	OrthoFinder
Cre09.g390000	30781417	RNA biosynthesis.transcriptional activation.PHD finger...	0.02	OrthoFinder
Cre12.g508150	30793288	Chromatin organisation.chromatin remodeling...	0.01	OrthoFinder
Cz01g25030.t1	No alias	Helicase, C-terminal; Chromo domain; Domain of unknown...	0.01	OrthoFinder
Dusal.0280s00012.1	33203409	SNF2-related, N-terminal domain [Interproscan].	0.02	OrthoFinder
Dusal.1946s00001.1	33193641	Helicase, C-terminal [Interproscan].	0.02	OrthoFinder
EOD18155	No alias	High mobility group box domain; ISWI, HAND domain;...	0.02	OrthoFinder
EOD25651	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.01	OrthoFinder
EOD41894	No alias	SNF2-related, N-terminal domain [Interproscan].	0.01	OrthoFinder
OT_01G05670.1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain;...	0.02	OrthoFinder
OT_06G03660.1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain;...	0.02	OrthoFinder
OT_12G02840.1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain;...	0.02	OrthoFinder
Sro125_g060200.1	Contig2833.g22731	Chromodomain-helicase-DNA-binding protein	0.02	OrthoFinder
Sro19_g013190.1	Contig446.g5983	CHD3-type chromatin-remodeling factor	0.02	OrthoFinder
Sro264_g102660.1	Contig921.g9692	Probable chromatin-remodeling complex ATPase chain	0.02	OrthoFinder
Sro272_g104840.1	Contig2144.g18025	Chromodomain-helicase-DNA-binding protein	0.06	OrthoFinder
Sro2_g001340.1	Contig467.g6292	CHD3-type chromatin-remodeling factor PICKLE	0.02	OrthoFinder
Sro358_g125960.1	Contig1210.g11383	Probable chromatin-remodeling complex ATPase chain	0.02	OrthoFinder
Sro566_g167850.1	Contig3739.g28680	ISWI chromatin-remodeling complex ATPase ISW2	0.03	OrthoFinder
TP11G02170.1	No alias	SNF2-related, N-terminal domain; Chromo domain;...	0.04	OrthoFinder
Vocar.0021s0108.1	32895927	SNF2-related, N-terminal domain [Interproscan].	0.02	OrthoFinder
XM_002499538.1	MICPUN_56143, 56143	SNF2 super family	0.02	OrthoFinder
XM_002503134.1	MICPUN_59225, 59225	SNF2 super family	0.02	OrthoFinder
XM_002507782.1	MICPUN_60518, 60518	SNF2 super family	0.02	OrthoFinder
XM_003062178.1	MicpuC2_21039, 21039	SNF2 super family	0.02	OrthoFinder
XM_003062821.1	MicpuC2_52710, 52710	FY-rich, N-terminal; Helicase, C-terminal; FY-rich,...	0.02	OrthoFinder
lcl\|BLLF01003574.1_cds_GFH27683.1_22160	HaLaN_26047, GFH27683	SNF2-related, N-terminal domain [Interproscan].	0.01	OrthoFinder
lcl\|LHPG02000006.1_cds_PRW57711.1_8458	PRW57711	CHROMATIN REMODELING 5 isoform A	0.02	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495718.1_1716	KAA8495718	Chromodomain-helicase-DNA-binding protein 2	0.03	OrthoFinder
lcl\|VRMN01000008.1_cds_KAA8492942.1_2678	KAA8492942	TATA-binding protein-associated factor	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	Enrichment
BP	GO:0000723	telomere maintenance	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003896	DNA primase activity	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
MF	GO:0005534	galactose binding	IEP	Enrichment
BP	GO:0006259	DNA metabolic process	IEP	Enrichment
BP	GO:0006281	DNA repair	IEP	Enrichment
BP	GO:0006534	cysteine metabolic process	IEP	Enrichment
BP	GO:0006887	exocytosis	IEP	Enrichment
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	Enrichment
BP	GO:0009092	homoserine metabolic process	IEP	Enrichment
BP	GO:0016192	vesicle-mediated transport	IEP	Enrichment
BP	GO:0016197	endosomal transport	IEP	Enrichment
BP	GO:0016482	cytosolic transport	IEP	Enrichment
BP	GO:0019346	transsulfuration	IEP	Enrichment
MF	GO:0019842	vitamin binding	IEP	Enrichment
MF	GO:0030170	pyridoxal phosphate binding	IEP	Enrichment
CC	GO:0030173	integral component of Golgi membrane	IEP	Enrichment
MF	GO:0030246	carbohydrate binding	IEP	Enrichment
CC	GO:0030906	retromer, cargo-selective complex	IEP	Enrichment
CC	GO:0031228	intrinsic component of Golgi membrane	IEP	Enrichment
CC	GO:0031300	intrinsic component of organelle membrane	IEP	Enrichment
CC	GO:0031301	integral component of organelle membrane	IEP	Enrichment
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Enrichment
BP	GO:0032200	telomere organization	IEP	Enrichment
BP	GO:0032940	secretion by cell	IEP	Enrichment
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	Enrichment
MF	GO:0043531	ADP binding	IEP	Enrichment
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Enrichment
BP	GO:0046903	secretion	IEP	Enrichment
MF	GO:0048029	monosaccharide binding	IEP	Enrichment
BP	GO:0050667	homocysteine metabolic process	IEP	Enrichment
BP	GO:0060249	anatomical structure homeostasis	IEP	Enrichment
MF	GO:0070279	vitamin B6 binding	IEP	Enrichment
BP	GO:0140352	export from cell	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR015195	SLIDE	1065	1175
IPR009071	HMG_box_dom	32	99
IPR001650	Helicase_C	634	745
IPR000330	SNF2_N	332	610

External Links

No external refs found!

PTI_12G00850.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation