PTI_12G00560.1


Description : tRNA-dihydrouridine synthase [Interproscan].


Gene families : OG_01_0001054 (OrthoFinder) Phylogenetic Tree(s): OG0001054_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_12G00560.1
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000241.80 tig00000241_g20942.t1 RNA processing.RNA modification.dihydrouridylation.tRNA... 0.04 OrthoFinder
Cre04.g229948 30791118 RNA processing.RNA modification.dihydrouridylation.tRNA... 0.04 OrthoFinder
OT_10G01720.1 No alias tRNA-dihydrouridine synthase [Interproscan]. 0.04 OrthoFinder
Sro2255_g321010.1 Contig1871.g16359 Synthase 0.02 OrthoFinder
Sro767_g199550.1 Contig2377.g19543 Synthase 0.06 OrthoFinder
Transcript_contig_57299 57299 tRNA-dihydrouridine synthase [Interproscan]. 0.01 OrthoFinder
Vocar.0001s1778.1 32885246 E3 ligase, CCCH-type zinc finger; tRNA-dihydrouridine... 0.02 OrthoFinder
Vocar.0017s0070.1 32891389 tRNA-dihydrouridine synthase [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61399.1_401 PRW61399 TRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0008033 tRNA processing IEA Interproscan
MF GO:0017150 tRNA dihydrouridine synthase activity IEA Interproscan
MF GO:0050660 flavin adenine dinucleotide binding IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR001269 DUS_fam 270 515
No external refs found!