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  5. PTI_11G03860.1

PTI_11G03860.1


Description : Helicase, C-terminal; Helicase-associated domain; Domain of unknown function DUF1605; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_11G03860.1
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000984.27 tig00000984_g6004.t1 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 OrthoFinder
Cpa|evm.model.tig00020531.53 tig00020531_g10059.t1 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.01 OrthoFinder
Cpa|evm.model.tig00022075.25 tig00022075_g23589.t1 RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder
Cre07.g349100 30774605 RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder
Cre08.g358563 30773457 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder
Cz02g22140.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
Cz12g28100.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
Cz14g08150.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.03 OrthoFinder
Dusal.0072s00015.1 33199066 Helicase-associated domain; Helicase, C-terminal; Domain... 0.01 OrthoFinder
Dusal.0244s00011.1 33186504 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Dusal.3054s00001.1 33200064 Helicase-associated domain [Interproscan]. 0.01 OrthoFinder
EOD10970 No alias Helicase, C-terminal; Domain of unknown function... 0.03 OrthoFinder
EOD29635 No alias ATP-dependent RNA helicase [Ensembl]. 0.02 OrthoFinder
EOD31099 No alias Domain of unknown function DUF1605 [Interproscan]. 0.01 OrthoFinder
EOD31583 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
EOD37846 No alias ATP-dependent RNA helicase [Ensembl]. 0.02 OrthoFinder
OT_04G02170.1 No alias S1 domain; AAA+ ATPase domain; Helicase, C-terminal;... 0.04 OrthoFinder
OT_14G00410.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
Sro1496_g277510.1 Contig2419.g19801 Splicing factor ATP-dependent RNA helicase 0.03 OrthoFinder
Sro2910_g340090.1 Contig1382.g12705 Splicing factor ATP-dependent RNA helicase 0.01 OrthoFinder
Sro657_g182550.1 Contig301.g3975 Splicing factor ATP-dependent RNA helicase-like protein cdc28 0.04 OrthoFinder
TP01G06540.1 No alias Domain of unknown function DUF1605; S1 domain; Helicase,... 0.03 OrthoFinder
Transcript_contig_55707 55707 Helicase, C-terminal; S1 domain; DEAD/DEAH box helicase... 0.02 OrthoFinder
Transcript_contig_89480 89480 Helicase-associated domain; Helicase, C-terminal; Domain... 0.01 OrthoFinder
Vocar.0005s0082.1 32884001 Domain of unknown function DUF1605; Helicase,... 0.02 OrthoFinder
XM_003057993.1 MicpuC2_57106, 57106 Helicase, C-terminal; Helicase-associated domain; Domain... 0.01 OrthoFinder
XM_003062998.1 MicpuC2_71074, 71074 RNA helicase, splicing factor 0.02 OrthoFinder
lcl|BLLF01002785.1_cds_GFH25342.1_19819 HaLaN_23284, GFH25342 Helicase-associated domain; Domain of unknown function... 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59127.1_7530 PRW59127 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.03 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58375.1_7631 PRW58375 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 0.05 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32898.1_3654 PRW32898 ATP-dependent RNA helicase isoform X1 0.03 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20509.1_5500 PRW20509 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004402 histone acetyltransferase activity IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0005049 nuclear export signal receptor activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005963 magnesium-dependent protein serine/threonine phosphatase complex IEP Enrichment
BP GO:0006473 protein acetylation IEP Enrichment
BP GO:0006475 internal protein amino acid acetylation IEP Enrichment
BP GO:0006650 glycerophospholipid metabolic process IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
CC GO:0008287 protein serine/threonine phosphatase complex IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
BP GO:0016573 histone acetylation IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
BP GO:0018393 internal peptidyl-lysine acetylation IEP Enrichment
BP GO:0018394 peptidyl-lysine acetylation IEP Enrichment
MF GO:0019888 protein phosphatase regulator activity IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
CC GO:0030289 protein phosphatase 4 complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0034212 peptide N-acetyltransferase activity IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
MF GO:0042393 histone binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043543 protein acylation IEP Enrichment
BP GO:0043631 RNA polyadenylation IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046488 phosphatidylinositol metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140142 nucleocytoplasmic carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
CC GO:1903293 phosphatase complex IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 565 732
IPR011709 DUF1605 1113 1189
IPR001650 Helicase_C 773 904
IPR007502 Helicase-assoc_dom 967 1054
No external refs found!