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  5. PTI_11G03560.1

PTI_11G03560.1


Description : Helicase, C-terminal; ATP-dependent DNA helicase RecQ, zinc-binding domain; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000107 (OrthoFinder) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_11G03560.1
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
EOD15463 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.02 OrthoFinder
OT_04G00490.1 No alias DEAD/DEAH box helicase domain; HRDC domain; Helicase,... 0.01 OrthoFinder
OT_05G04280.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Sro108_g054090.1 Contig2294.g18989 Syndrome ATP-dependent helicase homolog 0.02 OrthoFinder
Sro2203_g318940.1 Contig3463.g26860 Bloom syndrome protein homolog 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59746.1_6179 PRW59746 ATP-dependent DNA helicase Q-like 3 isoform X1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
MF GO:0005244 voltage-gated ion channel activity IEP Enrichment
MF GO:0005247 voltage-gated chloride channel activity IEP Enrichment
MF GO:0005253 anion channel activity IEP Enrichment
MF GO:0005254 chloride channel activity IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0005996 monosaccharide metabolic process IEP Enrichment
BP GO:0006013 mannose metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006821 chloride transport IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008308 voltage-gated anion channel activity IEP Enrichment
MF GO:0008484 sulfuric ester hydrolase activity IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
MF GO:0016409 palmitoyltransferase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
BP GO:0019318 hexose metabolic process IEP Enrichment
MF GO:0022832 voltage-gated channel activity IEP Enrichment
MF GO:0022836 gated channel activity IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0120227 acyl-CoA binding IEP Enrichment
MF GO:1901567 fatty acid derivative binding IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 414 511
IPR011545 DEAD/DEAH_box_helicase_dom 175 346
IPR032284 RecQ_Zn-bd 540 589
No external refs found!