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  5. PTI_11G02920.1

PTI_11G02920.1


Description : Exonuclease, RNase T/DNA polymerase III [Interproscan].


Gene families : OG_01_0000873 (OrthoFinder) Phylogenetic Tree(s): OG0000873_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_11G02920.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001310.11 tig00001310_g8161.t1 No description available 0.02 OrthoFinder
Cre11.g480060 30775535 No description available 0.05 OrthoFinder
OT_02G02480.1 No alias Ribonuclease H domain; Exonuclease, RNase T/DNA... 0.11 OrthoFinder
OT_03G01160.1 No alias Exonuclease, RNase T/DNA polymerase III [Interproscan]. 0.09 OrthoFinder
Sro246_g097710.1 Contig171.g1955 Interferon-stimulated 20 kDa exonuclease-like 2 0.14 OrthoFinder
TP22G01600.1 No alias Exonuclease, RNase T/DNA polymerase III [Interproscan]. 0.07 OrthoFinder
Transcript_contig_53924 53924 Exonuclease, RNase T/DNA polymerase III [Interproscan]. 0.02 OrthoFinder
Vocar.0048s0021.1 32893643 Exonuclease, RNase T/DNA polymerase III [Interproscan]. 0.02 OrthoFinder
XM_003062382.1 MicpuC2_5594, 5594 Exonuclease, RNase T/DNA polymerase III [Interproscan]. 0.05 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59412.1_7034 PRW59412 RNA exonuclease 4 0.08 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493352.1_9653 KAA8493352 RNA exonuclease 4 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006360 transcription by RNA polymerase I IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR013520 Exonuclease_RNaseT/DNA_pol3 174 329
No external refs found!