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  5. PTI_10G01300.1

PTI_10G01300.1


Description : DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000129 (OrthoFinder) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_10G01300.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Sro1790_g297740.1 Contig4724.g35072 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic 0.02 OrthoFinder
TP15G01550.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.02 OrthoFinder
lcl|LHPG02000025.1_cds_PRW20239.1_5726 PRW20239 ATP-dependent RNA helicase DHX36 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004527 exonuclease activity IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 628 786
No external refs found!