1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_10G00280.1

PTI_10G00280.1


Description : Squalene/phytoene synthase; NUDIX hydrolase domain [Interproscan].


Gene families : OG_01_0000364 (OrthoFinder) Phylogenetic Tree(s): OG0000364_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_10G00280.1
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
Cre03.g175250 30787436 Secondary metabolism.terpenoids.terpenoid... 0.02 OrthoFinder
Sro2_g001860.1 Contig467.g6344 Inactive squalene synthase 2 0.02 OrthoFinder
XM_002501410.1 MICPUN_108133, 108133 Squalene/phytoene synthase [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498029.1_6982 KAA8498029 Isopentenyl-diphosphate Delta-isomerase I 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0016787 hydrolase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0003937 IMP cyclohydrolase activity IEP Enrichment
MF GO:0004576 oligosaccharyl transferase activity IEP Enrichment
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Enrichment
MF GO:0004807 triose-phosphate isomerase activity IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016758 hexosyltransferase activity IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0019238 cyclohydrolase activity IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0043647 inositol phosphate metabolic process IEP Enrichment
BP GO:0046164 alcohol catabolic process IEP Enrichment
BP GO:0046174 polyol catabolic process IEP Enrichment
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Enrichment
BP GO:0046855 inositol phosphate dephosphorylation IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0071545 inositol phosphate catabolic process IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
BP GO:1901616 organic hydroxy compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000086 NUDIX_hydrolase_dom 58 221
No external refs found!