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  5. PTI_10G00030.1

PTI_10G00030.1


Description : Bestrophin/UPF0187 [Interproscan].


Gene families : OG_01_0000064 (OrthoFinder) Phylogenetic Tree(s): OG0000064_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_10G00030.1
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000215.17 tig00000215_g18546.t1 Solute transport.channels.VCCN chloride anion channel 0.02 OrthoFinder
Cre16.g662600 30777389 Solute transport.channels.VCCN chloride anion channel 0.04 OrthoFinder
Cre16.g663400 30777714 Solute transport.channels.VCCN chloride anion channel 0.04 OrthoFinder
Cre16.g663450 30778050 Solute transport.channels.VCCN chloride anion channel 0.01 OrthoFinder
Dusal.0033s00032.1 33202500 Bestrophin/UPF0187 [Interproscan]. 0.07 OrthoFinder
Sro1409_g270140.1 Contig1095.g10595 UPF0187 protein 0.02 OrthoFinder
Sro145_g067260.1 Contig3646.g28172 UPF0187 protein 0.03 OrthoFinder
Sro152_g069350.1 Contig69.g695 UPF0187 protein 0.02 OrthoFinder
Sro1713_g292960.1 Contig2943.g23376 UPF0187 protein 0.03 OrthoFinder
Sro1890_g303730.1 Contig981.g9967 UPF0187 protein 0.02 OrthoFinder
Sro2204_g318970.1 Contig732.g8410 UPF0187 protein 0.03 OrthoFinder
Sro2935_g340570.1 Contig676.g7905 UPF0187 protein 0.02 OrthoFinder
Sro482_g151740.1 Contig232.g2784 UPF0187 protein 0.02 OrthoFinder
Sro659_g182830.1 Contig2136.g17991 UPF0187 protein 0.03 OrthoFinder
SymbC1.scaffold1693.2 1693.2 EF-hand domain; Bestrophin/UPF0187 [Interproscan]. 0.02 OrthoFinder
TP08G03260.1 No alias Bestrophin/UPF0187 [Interproscan]. 0.03 OrthoFinder
Transcript_contig_78434 78434 Bestrophin/UPF0187 [Interproscan]. 0.02 OrthoFinder
Vocar.0001s0742.1 32884347 Bestrophin/UPF0187 [Interproscan]. 0.02 OrthoFinder
Vocar.0039s0076.1 32897751 Bestrophin/UPF0187 [Interproscan]. 0.02 OrthoFinder
Vocar.0041s0049.1 32888730 Bestrophin/UPF0187 [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000016.1_cds_PRW33726.1_3376 PRW33726 UPF0187 chloroplastic 0.02 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33245.1_3628 PRW33245 UPF0187 chloroplastic 0.02 OrthoFinder
lcl|LHPG02000019.1_cds_PRW32665.1_4091 PRW32665 UPF0187 chloroplastic 0.02 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493716.1_4478 KAA8493716 UPF0187 protein 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004089 carbonate dehydratase activity IEP Enrichment
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP Enrichment
MF GO:0004375 glycine dehydrogenase (decarboxylating) activity IEP Enrichment
MF GO:0004601 peroxidase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006544 glycine metabolic process IEP Enrichment
BP GO:0006546 glycine catabolic process IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
BP GO:0006979 response to oxidative stress IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Enrichment
BP GO:0009063 cellular amino acid catabolic process IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009071 serine family amino acid catabolic process IEP Enrichment
BP GO:0016054 organic acid catabolic process IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Enrichment
MF GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Enrichment
MF GO:0016744 transketolase or transaldolase activity IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016832 aldehyde-lyase activity IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
BP GO:0044282 small molecule catabolic process IEP Enrichment
BP GO:0046395 carboxylic acid catabolic process IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
BP GO:1901606 alpha-amino acid catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR021134 Bestrophin/UPF0187 75 378
No external refs found!