1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_09G00050.1

PTI_09G00050.1


Description : Coatomer, WD associated region; WD40 repeat [Interproscan].


Gene families : OG_01_0001908 (OrthoFinder) Phylogenetic Tree(s): OG0001908_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_09G00050.1
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020903.33 tig00020903_g15100.t1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 OrthoFinder
Cre02.g118500 30785510, COPB2 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.06 OrthoFinder
Dusal.0118s00002.1 33199925 WD40 repeat; Coatomer, WD associated region [Interproscan]. 0.04 OrthoFinder
EOD29435 No alias COPB2, beta' subunit of the coatomer [Ensembl]. 0.02 OrthoFinder
OT_01G02470.1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.02 OrthoFinder
Sro108_g054340.1 Contig2294.g19014 Coatomer subunit beta 0.05 OrthoFinder
Sro93_g048640.1 Contig3841.g29552 Coatomer subunit beta 0.03 OrthoFinder
TP04G00710.1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.03 OrthoFinder
Transcript_contig_54449 54449 Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.01 OrthoFinder
UNPLg00368.t1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.02 OrthoFinder
Vocar.0033s0044.1 32886333 WD40 repeat; Coatomer, WD associated region [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492792.1_2528 KAA8492792 Coatomer subunit beta'-1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0004576 oligosaccharyl transferase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
CC GO:0030119 AP-type membrane coat adaptor complex IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
CC GO:0030131 clathrin adaptor complex IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR006692 Coatomer_WD-assoc_reg 320 782
IPR001680 WD40_repeat 133 170
IPR001680 WD40_repeat 179 215
IPR001680 WD40_repeat 221 256
IPR001680 WD40_repeat 91 127
No external refs found!