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  5. PTI_08G02100.1

PTI_08G02100.1


Description : Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2 [Interproscan].


Gene families : OG_01_0000382 (OrthoFinder) Phylogenetic Tree(s): OG0000382_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_08G02100.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cre06.g284500 30778491 RNA processing.RNA decay.exosome complex.EXO9 core... 0.04 OrthoFinder
Cre17.g697624 30781907 RNA processing.RNA decay.exosome complex.EXO9 core... 0.01 OrthoFinder
OT_02G02490.1 No alias Exoribonuclease, phosphorolytic domain 1 [Interproscan]. 0.02 OrthoFinder
Sro2148_g316530.1 Contig3130.g24839 Complex component RRP41 0.03 OrthoFinder
Sro277_g106210.1 Contig444.g5959 Complex component RRP41 0.01 OrthoFinder
Transcript_contig_12656 12656 Exoribonuclease, phosphorolytic domain 2 [Interproscan]. 0.04 OrthoFinder
Vocar.0001s1480.1 32884513 Exoribonuclease, phosphorolytic domain 1;... 0.02 OrthoFinder
Vocar.0005s0487.1 32883546 Exoribonuclease, phosphorolytic domain 1 [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004402 histone acetyltransferase activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
MF GO:0004743 pyruvate kinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030955 potassium ion binding IEP Enrichment
MF GO:0031420 alkali metal ion binding IEP Enrichment
MF GO:0034212 peptide N-acetyltransferase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
BP GO:1901135 carbohydrate derivative metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
CC GO:1905354 exoribonuclease complex IEP Enrichment
InterPro domains Description Start Stop
IPR001247 ExoRNase_PH_dom1 50 205
IPR015847 ExoRNase_PH_dom2 210 270
No external refs found!