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  5. PTI_08G00280.1

PTI_08G00280.1


Description : LSM domain, eukaryotic/archaea-type [Interproscan].


Gene families : OG_01_0001195 (OrthoFinder) Phylogenetic Tree(s): OG0001195_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_08G00280.1
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
Cre05.g241300 30783199 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder
XM_002502692.1 MICPUN_59039, 59039 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006665 sphingolipid metabolic process IEP Enrichment
BP GO:0006672 ceramide metabolic process IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 22 85
No external refs found!